PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG014668t2 | ||||||||
Common Name | TCM_014668 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 383aa MW: 42246.9 Da PI: 7.9125 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.3 | 8e-42 | 89 | 165 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Thecc1EG014668t2 89 CLVDGCNSDLSSCRDYHRRHKVCELHSKTPQVMINGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 165 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.4E-34 | 82 | 150 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.094 | 86 | 163 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.79E-39 | 87 | 168 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.0E-31 | 89 | 162 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 383 aa Download sequence Send to blast |
MDWNLKATSW DLTELVNEAV PTIDVANGSS SYGVPRNEGD FSVDLKLGQV GNSGEESMNK 60 WKEPGELKME SSPSKRARAT NNGTHQVSCL VDGCNSDLSS CRDYHRRHKV CELHSKTPQV 120 MINGQKQRFC QQCSRFHSLE EFDEGKRSCR KRLDGHNRRR RKPQPDPLSR SGSYFSNYQG 180 TQMSPFSNLQ VYPSTTVVKP TWPGVTNSET DSRHLNQQQQ LHSPEKRNLV LGSSSSNYRG 240 GKQFMFLQGE NNTPQNQTLP EASVCQPLLR ATPFSEGSGG SHTMFCDRST TPVQDSDCAL 300 SLLSSPQTQT SGISLSSMVQ PRSFPLVQPL GPSLQNHIIE PMDSVVVANG RDTAVHCPGM 360 FHMGSGGSSG NEAPQTLPFH WQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 89 | 162 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 145 | 162 | KRSCRKRLDGHNRRRRKP |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007038017.2 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_017973830.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
TrEMBL | A0A061G652 | 0.0 | A0A061G652_THECC; Squamosa promoter-binding protein isoform 1 | ||||
STRING | EOY22519 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-71 | SBP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG014668t2 |
Entrez Gene | 18605126 |
Publications ? help Back to Top | |||
---|---|---|---|
|