PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014668t1
Common NameTCM_014668
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family SBP
Protein Properties Length: 383aa    MW: 42246.9 Da    PI: 7.9125
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014668t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.38e-4289165278
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       C v+gC++dls++++yhrrhkvCe hsk+p+v+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Thecc1EG014668t1  89 CLVDGCNSDLSSCRDYHRRHKVCELHSKTPQVMINGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 165
                       **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.4E-3482150IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.09486163IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-3987168IPR004333Transcription factor, SBP-box
PfamPF031102.0E-3189162IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDWNLKATSW DLTELVNEAV PTIDVANGSS SYGVPRNEGD FSVDLKLGQV GNSGEESMNK  60
WKEPGELKME SSPSKRARAT NNGTHQVSCL VDGCNSDLSS CRDYHRRHKV CELHSKTPQV  120
MINGQKQRFC QQCSRFHSLE EFDEGKRSCR KRLDGHNRRR RKPQPDPLSR SGSYFSNYQG  180
TQMSPFSNLQ VYPSTTVVKP TWPGVTNSET DSRHLNQQQQ LHSPEKRNLV LGSSSSNYRG  240
GKQFMFLQGE NNTPQNQTLP EASVCQPLLR ATPFSEGSGG SHTMFCDRST TPVQDSDCAL  300
SLLSSPQTQT SGISLSSMVQ PRSFPLVQPL GPSLQNHIIE PMDSVVVANG RDTAVHCPGM  360
FHMGSGGSSG NEAPQTLPFH WQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28891621184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145162KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038017.20.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_017973830.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A061G6520.0A0A061G652_THECC; Squamosa promoter-binding protein isoform 1
STRINGEOY225190.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-71SBP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]