PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG014651t1 | ||||||||
Common Name | TCM_014651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NF-YC | ||||||||
Protein Properties | Length: 238aa MW: 25671.8 Da PI: 4.84 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.3 | 3.5e-56 | 46 | 150 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifd Thecc1EG014651t1 46 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFD 138 89*****998899******************************************************************************** PP NF-YC 91 flvdivprdelk 102 flvdivprde+k Thecc1EG014651t1 139 FLVDIVPRDEIK 150 *********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.32E-34 | 34 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-20 | 68 | 131 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 7.1E-37 | 69 | 146 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDSNQQAQSS YPPQPPTAAI TPTPSTTTSA TPPPPFHHLL QQQQQQLQMF WSYQRQEIEQ 60 VNDFKNHQLP LARIKKIMKA DEDVRMISAE APILFAKACE LFILELTIRS WLHAEENKRR 120 TLQKNDIAAA ITRTDIFDFL VDIVPRDEIK DEAGLGGMVG ATASGVPYYY PPIGQPAGGP 180 AGPGGMIIGR PAVDPTSGVY VQPPSQAWQS VWQTAGAEDG SYGSGGSSGQ GNLDGQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-55 | 54 | 146 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 124 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007037992.2 | 1e-174 | PREDICTED: nuclear transcription factor Y subunit C-1 | ||||
Swissprot | Q9SMP0 | 1e-107 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A061FZJ3 | 1e-174 | A0A061FZJ3_THECC; Nuclear transcription factor Y subunit C-1 | ||||
STRING | EOY22493 | 1e-174 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-85 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG014651t1 |
Entrez Gene | 18605113 |
Publications ? help Back to Top | |||
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