PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG014550t1 | ||||||||
Common Name | TCM_014550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 496aa MW: 55130.6 Da PI: 4.8269 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.5 | 1.9e-12 | 157 | 179 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G++CkF+H+ Thecc1EG014550t1 157 EDCAYYMKTGLCKFGSNCKFNHP 179 89********************9 PP | |||||||
2 | zf-CCCH | 30.7 | 5.4e-10 | 203 | 227 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++rtG Ck+G C+++H++ Thecc1EG014550t1 203 QTECKYYLRTGGCKFGKACRYNHSR 227 568********************95 PP | |||||||
3 | zf-CCCH | 39.8 | 7.8e-13 | 248 | 272 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Thecc1EG014550t1 248 GEKECPYYMRNGSCKYGANCRFNHP 272 7899********************9 PP | |||||||
4 | zf-CCCH | 28.5 | 2.6e-09 | 382 | 408 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ Thecc1EG014550t1 382 PGQPECSYFMKTGDCKFKSNCKYHHPK 408 5789*********************96 PP | |||||||
5 | zf-CCCH | 36.2 | 1e-11 | 429 | 453 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G+Ck+G+ CkF H+ Thecc1EG014550t1 429 DQSICSHYSRYGICKFGPACKFDHS 453 6789********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.314 | 153 | 181 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-6 | 153 | 180 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-6 | 153 | 181 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-10 | 157 | 179 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-5 | 159 | 178 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 200 | 227 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.784 | 200 | 228 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-6 | 203 | 229 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.5E-8 | 204 | 227 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 206 | 227 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-7 | 246 | 273 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.324 | 246 | 274 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 248 | 274 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-10 | 248 | 272 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-5 | 252 | 271 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 381 | 408 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.202 | 381 | 409 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.9E-7 | 383 | 408 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 385 | 410 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 425 | 453 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-4 | 427 | 454 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.258 | 427 | 455 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-9 | 429 | 453 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 431 | 454 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MRHYYFFQVE IYSCNKWVLK CGLTMSQSEE TPISDSTPTD SALHLGLHSL DPDPSPNPDP 60 SPSDLNHSAQ ETDHDQSNLE QQLQNLDLKE EEGEEEEGDE EAEKKDDRDR ESDNEADVDA 120 AGDDEDEVEE KNEYEDDDEN VTNEGRRSHY PVRPEAEDCA YYMKTGLCKF GSNCKFNHPV 180 RRKNQAVKEK VKEKDESTEK PSQTECKYYL RTGGCKFGKA CRYNHSRAKT AVAPILELNF 240 LGLPIRPGEK ECPYYMRNGS CKYGANCRFN HPDPTTAGAC DPPSGYGNGG PVSSQAASQV 300 NIASWSSPRT LNETPYMPMM FSPTQGVPPP NPEWNGYQTT VYAPERNLHP TPAYVMNNPS 360 TETAVYTHHQ PQMLVDEFPV RPGQPECSYF MKTGDCKFKS NCKYHHPKNR VAKPSPCTLS 420 DKGLPLRPDQ SICSHYSRYG ICKFGPACKF DHSVQAAPSV VSGLDQPLPF SNSAATEESG 480 IAGSNGTDTA VQQSV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017972830.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2 | ||||
Swissprot | Q9STM4 | 1e-144 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A061FXU4 | 0.0 | A0A061FXU4_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative | ||||
STRING | EOY22360 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4176 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-141 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG014550t1 |
Entrez Gene | 18605028 |
Publications ? help Back to Top | |||
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