PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014441t1
Common NameTCM_014441
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family CO-like
Protein Properties Length: 400aa    MW: 45067.5 Da    PI: 5.3047
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014441t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.8e-071050438
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                      r+C++++    +l+C++++++lC+dC   +H        H+
  Thecc1EG014441t1 10 RTCDTCQAAACTLYCHTDSSYLCNDCDKRIHAAnpmassHQ 50
                      79******99*********************6567777776 PP
2zf-B_box231.6e-075197242
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                      + ++C+ +e+  +   C+ +   lC +C  e+H +       H +vp+
  Thecc1EG014441t1 51 RVWICAVCENAAAAVTCRADAASLCIKCDIEIH-SvnplarrHIRVPI 97
                      5789*******9*********************.44677777887775 PP
3CCT69.21.1e-23333376144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea++lRY+eKrk RkFeKkirY+sRKa+Ae+RpRvKGrF++++
  Thecc1EG014441t1 333 REAKVLRYREKRKARKFEKKIRYASRKAYAETRPRVKGRFARKT 376
                       9****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.4E-11754IPR000315B-box-type zinc finger
PROSITE profilePS501199.655754IPR000315B-box-type zinc finger
CDDcd000213.86E-61054No hitNo description
PROSITE profilePS501199.9975097IPR000315B-box-type zinc finger
PfamPF006431.5E-55197IPR000315B-box-type zinc finger
CDDcd000212.01E-55397No hitNo description
SMARTSM003367.1E-75597IPR000315B-box-type zinc finger
PfamPF062031.7E-17333375IPR010402CCT domain
PROSITE profilePS5101716.966333375IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MVTYQANWAR TCDTCQAAAC TLYCHTDSSY LCNDCDKRIH AANPMASSHQ RVWICAVCEN  60
AAAAVTCRAD AASLCIKCDI EIHSVNPLAR RHIRVPIPPL SGLACSSSST HQVELPDPMF  120
DTENEIAAGT INEEIDENET DCWLLLEPDS TDNQTMSGFT YGEQVDEYMD VRDTCTEYRC  180
QEQCSDQQQL LCVNNPEDSG SDIDVPVQTF ESKKQSQQQE KQLQRQTHQQ LQGIYFNTEH  240
RGSKAAFMYT PSSTLSARGA QPLHQCSRDF PKSVNEEQQT NGIYVPLPLI TAGILPNATS  300
NIPSTYTGFP NGATDLFPYP LPLMPLQFTP MNREAKVLRY REKRKARKFE KKIRYASRKA  360
YAETRPRVKG RFARKTDMEI EDDQLFSKED YGYCIVPSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286963.10.0LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 2-like
TrEMBLA0A061FYA30.0A0A061FYA3_THECC; JHL10I11.10 protein, putative isoform 1
STRINGEOY222160.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1921777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.19e-58CONSTANS-like 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]