PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG014427t1

Common Name

TCM_014427

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 291aa MW: 33061.1 Da PI: 8.4303

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG014427t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	44.6	2.9e-14	233	288	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dD y+Wr G K g++ rs+Y+C+ +g p++k v+rs d++++ei+ + +Hnh+ Thecc1EG014427t1 233 DDAYSWRCIGIKGLIGNR-RRSFYKCARPGFPATKSVDRSL-DGQITEIIHKARHNHP 288 8*************97.6*****************.*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.1E-12	225	288	IPR003657	WRKY domain
SuperFamily	SSF118290	6.15E-10	227	288	IPR003657	WRKY domain
SMART	SM00774	6.6E-7	232	289	IPR003657	WRKY domain
PROSITE profile	PS50811	10.831	233	290	IPR003657	WRKY domain
Pfam	PF03106	2.7E-9	233	288	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MELSSQTLKI IKGERQWWED MKWNDAEWGN RPDYLMHILS LLDKEKDAMT QLAEDRDLFE 60 VTMQNEGQQL GNSISFAYES TISMFSSYFT IPPAPELRPA KLSDPPPLMN AFNVLQSPFS 120 GELAAVSSNQ QSNTGNNQQS TIGREENNSS DVSCLSIAPP KPLFYFINDI STFSKHNSNL 180 LNNLLDLFKF RARLQARSFE EVAKQSQSKG NLQANYGNYY KQYSHLVKSR KSDDAYSWRC 240 IGIKGLIGNR RRSFYKCARP GFPATKSVDR SLDGQITEII HKARHNHPES *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021286255.1	2e-64	probable WRKY transcription factor 34
TrEMBL	A0A061G5C1	0.0	A0A061G5C1_THECC; Uncharacterized protein
STRING	EOY22204	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.1	6e-16	WRKY DNA-binding protein 4

Link Out ? help Back to Top
Phytozome	Thecc1EG014427t1
Entrez Gene	18604931

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]