PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG014407t1

Common Name

TCM_014407

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 200aa MW: 22768.1 Da PI: 7.3956

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG014407t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.1	1.2e-15	104	163	3	62
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++kr rr+++NRe+ArrsR RKk++ieeL+ v++L++ N++L ++l +l + + +e Thecc1EG014407t1 104 DDKRLRRMISNRESARRSRMRKKQQIEELQSQVDQLQTINRQLSQKLINLLESNHETLQE 163 68******************************************9998887777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-15	102	166	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.346	104	167	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.8E-13	105	164	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-12	106	169	No hit	No description
SuperFamily	SSF57959	1.0E-11	106	156	No hit	No description
CDD	cd14702	1.03E-16	107	158	No hit	No description
PROSITE pattern	PS00036	0	109	124	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MEAPDFEAHR NQPHATPNQS FFAFCPSQKT YTSAAHLNMQ SLEIAGNRSV QHGNSSQHPD 60 SSTNFSSRLS PNSQVHFPFH LFSPNSSSLS TEDEGREYQP SIVDDKRLRR MISNRESARR 120 SRMRKKQQIE ELQSQVDQLQ TINRQLSQKL INLLESNHET LQENAQLKER VSTLHMVLAD 180 VFTPPRNLED TSLEHKSAS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007037689.2	1e-142	PREDICTED: basic leucine zipper 8
TrEMBL	A0A061FXG4	1e-143	A0A061FXG4_THECC; Basic leucine-zipper 70, putative
STRING	EOY22190	1e-144	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6185	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	3e-36	basic leucine-zipper 70

Link Out ? help Back to Top
Phytozome	Thecc1EG014407t1
Entrez Gene	18604921

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]