PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014392t2
Common NameTCM_014392
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 565aa    MW: 61269.9 Da    PI: 7.7499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014392t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.88.2e-18264313255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Thecc1EG014392t2 264 RSKHSATEQRRRSKINDRFQMLRDLIPHS----DQKRDKASFLLEVIEYIQFLQ 313
                       889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.8E-25259334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.964262312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-19262339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-15264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-16264317No hitNo description
SMARTSM003536.8E-14268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MELPQSRPFG AEGRKSTHDF LSLYSHPSVQ QDPRPPAQGG YLKTHDFLQL ERLGKTSAKE  60
ETPVEVATAE KPPPPAPPPS VEHILPGGIG TYSISHISYF NPRVPKAEGA IYNVAQGSNT  120
ERNDENSNCS SYAGSGFTLW EESAGKKGKT GKENAGETPV VREAAGKVGQ WATSSLERAS  180
QSSTNNHRNS FSSLSSSQPS SKQKSQSFME MIKSAKGSAQ DDDFEEDEDF VLKKESSTTT  240
HSKGELRVKV DGKSAPDQKA NTPRSKHSAT EQRRRSKIND RFQMLRDLIP HSDQKRDKAS  300
FLLEVIEYIQ FLQEKVHKYE GTYQGWSHEP SKLMPWRNNH RPTENYADQS QAINGVSAPA  360
LVFSAKFDEK NITVAPTIPG SAHNPIESDM STATTFRAID LSPGMMNKTM PFPVSLQPNF  420
FASAQSTGAA AQLVPRLPSD VANCASQPQS IACHSGSFTT DGALPSEKLK EQELTIEGGT  480
ISISSVYSQG LLNTLTQALQ TSGVDLSHAS ISVQIELGKR SSSRPTASAS TLKDREAPTA  540
NQGTTRSRVG CGEDSDQPLK KLKT*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037673.20.0PREDICTED: transcription factor BIM1 isoform X1
SwissprotQ9LEZ31e-131BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A061G5970.0A0A061G597_THECC; Transcription factor BIM1, putative isoform 2
STRINGEOY221730.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-123bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]