PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014374t1
Common NameTCM_014374
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Dof
Protein Properties Length: 532aa    MW: 57434 Da    PI: 6.724
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014374t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.62.8e-383695362
            zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                      +++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+
  Thecc1EG014374t1 36 HQSLKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSK 95
                      6889****************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-303593IPR003851Zinc finger, Dof-type
PfamPF027015.6E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5063993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MQDIHTIGGG RIFNGGGGGG GGGGDRRLRP HHHPNHQSLK CPRCDSLNTK FCYYNNYNLS  60
QPRHFCKSCR RYWTKGGVLR NVPVGGGCRK AKRSKTKPSS ETTTAAAAAA AAVPPQPQQQ  120
HRDERKANSL SSSESSSLTA ANSNVAVTNN NNNNDNDNNN NNSSAGGTAE AVSAVTSHSN  180
LINVSESKFY GNPNSLGFEP GLLEQGSDCG IFSEIGSFTS LITSSNNETL SFGFSTVLNG  240
QGLEQGQWQQ QQKMMNIGGE EISGGLLDQT VQVELSNLHS RSEGEGSGGF GPLDWQGSGD  300
QGLFDLPNAV DQTYWSQSQW TDQDHPNLYL PQNSIALWLE NVPRHHETRK TVTIIANGGV  360
VDFDEEKRGE GKGWGNTMMW RLRWVVVVVV TGKLGMGGSR ACAEVVSPVS PPYGHTSHVS  420
VWVLESDVIL TISQGSLILS RDFLGSEFAV PHWHIMFAHI KCGFRTLDSR VRCGGWGGGG  480
NLGEGFDVVL LGILIFAMLG HLGVEHWCGP FLAETMIEAF MGLDLKFWVQ V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1816GGRIFNGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00570DAPTransfer from AT5G60850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021285636.10.0LOW QUALITY PROTEIN: dof zinc finger protein DOF5.4
TrEMBLA0A061FXE20.0A0A061FXE2_THECC; OBF binding protein 4, putative
STRINGEOY221600.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44822656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.18e-57OBF binding protein 4
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]