PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG014374t1 | ||||||||
Common Name | TCM_014374 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Dof | ||||||||
Protein Properties | Length: 532aa MW: 57434 Da PI: 6.724 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.6 | 2.8e-38 | 36 | 95 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ Thecc1EG014374t1 36 HQSLKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSK 95 6889****************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-30 | 35 | 93 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.6E-33 | 37 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.506 | 39 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 41 | 77 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MQDIHTIGGG RIFNGGGGGG GGGGDRRLRP HHHPNHQSLK CPRCDSLNTK FCYYNNYNLS 60 QPRHFCKSCR RYWTKGGVLR NVPVGGGCRK AKRSKTKPSS ETTTAAAAAA AAVPPQPQQQ 120 HRDERKANSL SSSESSSLTA ANSNVAVTNN NNNNDNDNNN NNSSAGGTAE AVSAVTSHSN 180 LINVSESKFY GNPNSLGFEP GLLEQGSDCG IFSEIGSFTS LITSSNNETL SFGFSTVLNG 240 QGLEQGQWQQ QQKMMNIGGE EISGGLLDQT VQVELSNLHS RSEGEGSGGF GPLDWQGSGD 300 QGLFDLPNAV DQTYWSQSQW TDQDHPNLYL PQNSIALWLE NVPRHHETRK TVTIIANGGV 360 VDFDEEKRGE GKGWGNTMMW RLRWVVVVVV TGKLGMGGSR ACAEVVSPVS PPYGHTSHVS 420 VWVLESDVIL TISQGSLILS RDFLGSEFAV PHWHIMFAHI KCGFRTLDSR VRCGGWGGGG 480 NLGEGFDVVL LGILIFAMLG HLGVEHWCGP FLAETMIEAF MGLDLKFWVQ V* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 16 | GGRIFNGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021285636.1 | 0.0 | LOW QUALITY PROTEIN: dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A061FXE2 | 0.0 | A0A061FXE2_THECC; OBF binding protein 4, putative | ||||
STRING | EOY22160 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4482 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 8e-57 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG014374t1 |
Entrez Gene | 18604901 |
Publications ? help Back to Top | |||
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