PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014330t1
Common NameTCM_014330
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family SBP
Protein Properties Length: 561aa    MW: 60849.6 Da    PI: 7.6289
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014330t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.81.4e-42176251277
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       Cqv gC++dl++ak+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  Thecc1EG014330t1 176 CQVYGCNKDLTSAKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 251
                       **************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-33170237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.65173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.77E-39174253IPR004333Transcription factor, SBP-box
PfamPF031105.4E-32176249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MESWSYVSGE KGSVSDAAIS PSDSYARNRS ALMNWELKGP YSFSNNMLVS GQQAIENHAF  60
GELGYGEFIG KQLPNDSIGD VLSSKVSRGR TVNPIMATLN AFSGEDESTS KFSSSVVDSN  120
SRESSLIDLK LGRFPDHRDG RNSSFSIGAP MLSSSESSTP PKRVRAAGVN SHTTYCQVYG  180
CNKDLTSAKD YHKRHKVCEV HSKTAKVIVN GIEQRFCQQC SRFHLLAEFD DGKRSCRKRL  240
AGHNERRRKP QIGIHSGRSG RLLQQYNGFA GGRFHGTMLT TASFICQDIL PSGLLHPDKY  300
VTNEWGKRIK VEDGTDYSPL PAIPIMDGHF HLKSPYHPSS IEKLFPSFHG NEDNAATGGI  360
LSVNNARYPH GFGGPNSVSR PLFQDTSLGS EDINVFDAAS TIQGLSGISD SGCALSLLSS  420
QSQNSSSHSS GIPMSRSLVI PGSHTHYNMS QVSGKLIGVS SQTSTTGVSN KFSSSGMNST  480
EGSHLGPLLI SDGSEAANFD ISGGIYQDSE FMNTKDRLSC EDGPTIDLLQ LSSQLQRVEH  540
QRQSMQVKQE NEAFCCLRIT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-301762491184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973789.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A061G5240.0A0A061G524_THECC; LIGULELESS1 protein, putative
STRINGEOY221290.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14770918
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-50SBP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]