PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014161t1
Common NameTCM_014161
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 557aa    MW: 60989 Da    PI: 8.1886
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014161t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.0007499118221
                       EETTTTEEESSHHHHHHHHH CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                       +C+ Cgk F ++  L  H++
  Thecc1EG014161t1  99 VCKECGKGFQSWKALFGHMK 118
                       6******************7 PP
2zf-C2H211.60.00085472494123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp+C k+F++   L  H r+H
  Thecc1EG014161t1 472 HECPICLKVFPSGQALGGHKRSH 494
                       79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.889936IPR007087Zinc finger, C2H2
SMARTSM003550.28931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.42E-9931No hitNo description
PfamPF139122.7E-5932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576678.42E-993120No hitNo description
SMARTSM003550.01798120IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.59698125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
PfamPF139122.0E-7100122IPR007087Zinc finger, C2H2
PROSITE profilePS501579.868385412IPR007087Zinc finger, C2H2
SMARTSM003550.14385407IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.66E-7385407No hitNo description
PfamPF139125.6E-11385409IPR007087Zinc finger, C2H2
PROSITE patternPS000280387407IPR007087Zinc finger, C2H2
SuperFamilySSF576676.66E-7467494No hitNo description
SMARTSM003550.071472494IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058472499IPR007087Zinc finger, C2H2
PfamPF139128.1E-13472494IPR007087Zinc finger, C2H2
PROSITE patternPS000280474494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MEEDQKFKHV CKFCSKSFSC GRSLGGHMRS HMTTNNNSAE TNDKLSKKKL VSVNNVGCGA  60
NTEAGLDAGI NGGYVLRGNP KKTWRVADSS EDTLVHDKVC KECGKGFQSW KALFGHMKCH  120
SEKERASNNS LEEQDSWTSA NQRLVMDSQS DNETAAPSKG RRSKRRTRYM GTANSSTFSL  180
TNHASSSMSE IEQEQEEVAL SLMMLSRDVG HWGGLNSVAE SSDNNSVFLE AKFEIKTSSC  240
NGNEVRLLKK QKEKELESGT VDSETFQAGA GQAEFCASGL SKTGIRVNKS KNEVSVHESV  300
KDERNSKSQL DGQFGAENSE VELSRNLVKQ TGVNRAQLGS SKLNSSKRKL QYSYDPELKS  360
GSVNKLTTDV LDSEFCKDPH KRSKFECTTC NKIFHSYQAL GGHRASHKKI KGCFASRIDG  420
SENSIETEHS PDPTADSKLV KSIGNEFPIA QLTADSDDKA EISYGVKKSK GHECPICLKV  480
FPSGQALGGH KRSHLVAEAK ANQAIVIQKP IPEIRDFLDL NLPAPVEEET SAHVGFKPWW  540
VGSSHKHEAL VGLISN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037499.20.0PREDICTED: uncharacterized protein LOC18604787
TrEMBLA0A061FWS60.0A0A061FWS6_THECC; C2H2-like zinc finger protein, putative
STRINGEOY220000.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16472912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-36C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]