PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG014141t4 | ||||||||
Common Name | TCM_014141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 398aa MW: 44159.9 Da PI: 8.7901 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.5 | 7.8e-16 | 210 | 255 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ +L++l+P+a K +Ka++L +++eY+k+Lq Thecc1EG014141t4 210 HNLSERRRRDRINQKMRTLQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 255 9************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-19 | 203 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-19 | 204 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.727 | 205 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-13 | 210 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.86E-16 | 210 | 259 | No hit | No description |
SMART | SM00353 | 2.4E-17 | 211 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0003690 | Molecular Function | double-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 398 aa Download sequence Send to blast |
MEMPCFNQFL YLKFRSNYEV AELTWENGQL AMHGLSGLLP TAPPTKPTWG RSNDTLESIV 60 HQATCHKQKQ NFNLLQHDQT RSNRSSIAAS SVGNWAESSS RLPVAAAAAL LKKRARSDSD 120 QCRKNLSGGI QEDRADRSAC ASASAAFCRD NDATMMTWAS HESPQSMKTK TADEDSSYHD 180 GSENQDEDRE TRGETGRSHS TRRSRAAAIH NLSERRRRDR INQKMRTLQK LVPNASKTDK 240 ASMLDEVIEY LKQLQAQVQM MSMRSMPQMM VPLGMQQHLQ MSLLARMGMG MLDINSMARF 300 PSQSLPPLMH PSPVTVPPTF LPPFVAPPMI PTREAAQANS DAISNASVPL PDPYCALLAQ 360 SVNMDLYSKM AALYRPQINQ TTQTASSPSR SNNVQED* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 110 | 116 | LKKRARS |
2 | 213 | 218 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007037470.2 | 0.0 | PREDICTED: transcription factor PIF7 | ||||
TrEMBL | A0A061G4L1 | 0.0 | A0A061G4L1_THECC; DNA binding protein, putative isoform 4 | ||||
STRING | EOY21971 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00050.1 | 4e-33 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG014141t4 |
Entrez Gene | 18604775 |
Publications ? help Back to Top | |||
---|---|---|---|
|