PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG014141t3 | ||||||||
Common Name | TCM_014141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 367aa MW: 40404.6 Da PI: 9.4727 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.6 | 6.9e-16 | 179 | 224 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ +L++l+P+a K +Ka++L +++eY+k+Lq Thecc1EG014141t3 179 HNLSERRRRDRINQKMRTLQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 224 9************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-19 | 172 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-19 | 173 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.727 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.57E-16 | 179 | 228 | No hit | No description |
Pfam | PF00010 | 2.3E-13 | 179 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-17 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0003690 | Molecular Function | double-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MHGLSGLLPT APPTKPTWGR SNDTLESIVH QATCHKQKQN FNLLQHDQTR SNRSSIAASS 60 VGNWAESSSR LPVAAAAALL KKRARSDSDQ CRKNLSGGIQ EDRADRSACA SASAAFCRDN 120 DATMMTWASH ESPQSMKTKT ADEDSSYHDG SENQDEDRET RGETGRSHST RRSRAAAIHN 180 LSERRRRDRI NQKMRTLQKL VPNASKTDKA SMLDEVIEYL KQLQAQVQMM SMRSMPQMMV 240 PLGMQQHLQM SLLARMGMGM LDINSMARFP SQSLPPLMHP SPVTVPPTFL PPFVAPPMIP 300 TREAAQANSD AISNASVPLP DPYCALLAQS VNMDLYSKMA ALYRPQINQT TQTASSPSRS 360 NNVQED* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 85 | LKKRARS |
2 | 182 | 187 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007037470.2 | 0.0 | PREDICTED: transcription factor PIF7 | ||||
TrEMBL | A0A061FY16 | 0.0 | A0A061FY16_THECC; DNA binding protein, putative isoform 3 | ||||
STRING | EOY21971 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 2e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG014141t3 |
Entrez Gene | 18604775 |
Publications ? help Back to Top | |||
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