PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG014141t1 | ||||||||
Common Name | TCM_014141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 423aa MW: 46833.6 Da PI: 8.3875 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.3 | 8.5e-16 | 235 | 280 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ +L++l+P+a K +Ka++L +++eY+k+Lq Thecc1EG014141t1 235 HNLSERRRRDRINQKMRTLQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 280 9************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-19 | 228 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-19 | 229 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.727 | 230 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.26E-16 | 235 | 284 | No hit | No description |
Pfam | PF00010 | 2.8E-13 | 235 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-17 | 236 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0003690 | Molecular Function | double-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MNQCVVPNWN LKHQRQEQVE EEGNRSSHVL NSSNAHLVPM SNYEVAELTW ENGQLAMHGL 60 SGLLPTAPPT KPTWGRSNDT LESIVHQATC HKQKQNFNLL QHDQTRSNRS SIAASSVGNW 120 AESSSRLPVA AAAALLKKRA RSDSDQCRKN LSGGIQEDRA DRSACASASA AFCRDNDATM 180 MTWASHESPQ SMKTKTADED SSYHDGSENQ DEDRETRGET GRSHSTRRSR AAAIHNLSER 240 RRRDRINQKM RTLQKLVPNA SKTDKASMLD EVIEYLKQLQ AQVQMMSMRS MPQMMVPLGM 300 QQHLQMSLLA RMGMGMLDIN SMARFPSQSL PPLMHPSPVT VPPTFLPPFV APPMIPTREA 360 AQANSDAISN ASVPLPDPYC ALLAQSVNMD LYSKMAALYR PQINQTTQTA SSPSRSNNVQ 420 ED* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 141 | LKKRARS |
2 | 238 | 243 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007037470.2 | 0.0 | PREDICTED: transcription factor PIF7 | ||||
TrEMBL | A0A061FXG3 | 0.0 | A0A061FXG3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 | ||||
STRING | EOY21971 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3919 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 2e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG014141t1 |
Entrez Gene | 18604775 |
Publications ? help Back to Top | |||
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