PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014091t1
Common NameTCM_014091
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 396aa    MW: 42857.7 Da    PI: 4.6613
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014091t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+ +++++G g W++ +++ g+ R++k+c++rw +yl
  Thecc1EG014091t1 14 KGPWTAEEDQKLIAYIQKHGEGGWRSLPEKAGLQRCGKSCRLRWANYL 61
                      79********************************************97 PP

2Myb_DNA-binding51.91.7e-1667111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg +T e+d+ ++++++ lG++ W++Iar+++ +Rt++++k++w+ +
  Thecc1EG014091t1  67 RGDFTSEDDQTIIELHAALGNR-WAAIARHLP-KRTDNEIKNYWNAH 111
                       899*******************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-24764IPR009057Homeodomain-like
PROSITE profilePS5129417.454961IPR017930Myb domain
SuperFamilySSF466898.24E-3111108IPR009057Homeodomain-like
SMARTSM007173.9E-131363IPR001005SANT/Myb domain
PfamPF002499.0E-161461IPR001005SANT/Myb domain
CDDcd001673.20E-111661No hitNo description
PROSITE profilePS5129424.92962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2565116IPR009057Homeodomain-like
SMARTSM007171.4E-1666114IPR001005SANT/Myb domain
PfamPF002496.6E-1567112IPR001005SANT/Myb domain
CDDcd001675.78E-1270112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGRTPFCTAE GLKKGPWTAE EDQKLIAYIQ KHGEGGWRSL PEKAGLQRCG KSCRLRWANY  60
LRPGIKRGDF TSEDDQTIIE LHAALGNRWA AIARHLPKRT DNEIKNYWNA HLKKRLATMS  120
IDPVTQKPVG TTPGSSSRNS STMGNAEPPM VHTESATKQE SEPTLQQPTS RSTSASALLL  180
NKLASRVTTL QCVDPLRACQ IMQSMSSKGT GDGGATANNE SAICRPTSNC QGNNISTALD  240
TSAWLDIAET LTTPLNCLDL LETLPPELAE CNASDDGGVS VDNYRIEDPV SDALSILDKN  300
ASAPASSFSS TSDRVLNNMA SKLASLPCVD EIHDWQHNLP GPIQGDSDTT TTGDVAILDD  360
ISIDDTTYDM VGSPIFYNLN YLENEPEPSD PFYIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31121185110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972560.10.0PREDICTED: transcription factor MYB76
TrEMBLA0A061FYF10.0A0A061FYF1_THECC; Myb domain 16-like protein
STRINGEOY219120.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.23e-73myb domain protein 16
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]