PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG014040t1 | ||||||||
Common Name | TCM_014040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Dof | ||||||||
Protein Properties | Length: 221aa MW: 25253.9 Da PI: 6.4008 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.5 | 2.5e-37 | 133 | 193 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qP +fCkaC+ryWt+ G++rn+PvG+grrknk+s Thecc1EG014040t1 133 PDKILPCPRCNSMDTKFCYYNNYNINQPHHFCKACQRYWTTSGTMRNMPVGAGRRKNKNSA 193 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-29 | 128 | 190 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-30 | 135 | 191 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.102 | 137 | 191 | IPR003851 | Zinc finger, Dof-type |
Gene3D | G3DSA:2.20.25.10 | 3.1E-4 | 137 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MQESKDHVIK LFGQKIHLPT DGEISTISAN DFDKAKCGNR VVVVEEEEEE EDEEEKEKTE 60 QDSLAEKTTK TGQEDDTPPS NTKEATNPST SPEPNVNHKT PSIDEETKKT KTGKTDKEQS 120 DATNSQKKTL KKPDKILPCP RCNSMDTKFC YYNNYNINQP HHFCKACQRY WTTSGTMRNM 180 PVGAGRRKNK NSASHYRHIS IYEWSSIDVV NYVLYIVDRW * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017973546.1 | 1e-112 | PREDICTED: LOW QUALITY PROTEIN: cyclic dof factor 3 | ||||
TrEMBL | A0A061FXT4 | 1e-163 | A0A061FXT4_THECC; Cycling DOF factor 2, putative | ||||
STRING | EOY21883 | 1e-164 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1269 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-45 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG014040t1 |
Entrez Gene | 18604714 |
Publications ? help Back to Top | |||
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