PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG014009t1

Common Name

TCM_014009

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Nin-like

Protein Properties

Length: 306aa MW: 35433.9 Da PI: 4.8136

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG014009t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.9	3.2e-26	143	191	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s +++s+yF+lpi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl Thecc1EG014009t1 143 MLSRKVISQYFYLPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 191 68999*****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.78	125	211	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-21	144	191	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGSHYSFNGW SKSELVAKEE ETSPFATQLP PDSSASVYYN SVDWQNEFPI QESFFDALPL 60 MSSFYTDPLY DSLDFEKSSS LIQDHLTIVA ENNLLGCEKG NGFWNELGAL FKPNGKNEDF 120 GEELKEERRA KRCREEKCSS STMLSRKVIS QYFYLPITQA AKELNVGLTL LKKRCRELGI 180 RRWPHRKLMS LQTLIWNVQE LQKEEGEESE RKLREAVEVL ERERKLLEEM PDLQLEDKTK 240 RLRQACFKAN YKKRKLMMME SQSSSGGSRE SLDLTRGYDM ENEEDEEEMK LLLSDSFSST 300 NIMAN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021287140.1	0.0	protein RKD1
TrEMBL	A0A061FXS1	0.0	A0A061FXS1_THECC; RWP-RK domain-containing protein, putative
STRING	EOY21863	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	6e-41	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Thecc1EG014009t1
Entrez Gene	18604697

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]