PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG013943t1 | ||||||||
Common Name | TCM_013943 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 400aa MW: 42691.1 Da PI: 7.9245 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.1 | 5.1e-41 | 80 | 185 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s +++ +s Thecc1EG013943t1 80 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPSQLRS 172 789******************************************************************999888888888887777755555 PP TCP 94 aa.kskksqksaa 105 + +s++s ++ Thecc1EG013943t1 173 SGfNSNFSMQQRR 185 5555555544443 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-41 | 84 | 250 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.923 | 86 | 140 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 400 aa Download sequence Send to blast |
MEGGGSDDHH LHHHHHLHHH HRPNFPFQLL EKKEEDNQPC SSSSSPPFPS LPASSSNDQP 60 NTTRPISSLQ ISPEPSKKPP PKRTSTKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK 120 SDGETIEWLL QQAEPAVIAA TGTGTIPANF TSLNISLRSS GSSMSVPSQL RSSGFNSNFS 180 MQQRRSLFPG IGLETTPAFL NFQSSSNLNS MFQAKQELRD NSTSLEISET EEGTLGRKRR 240 PEPDLSSQHQ MGSYLLQSST GAIPASHGQI PANFWMVTNS NNQVMSGDPI WTFPSVNNSA 300 LYRGTMSSGL HFMNFPAPMA LLPGQQLGSS GVTSGGGSGG SSGISEGHLN MLAGLNPYRQ 360 VSGIGVSESQ ASGSHSHHGG GGGGGGCGDD RHDTTSHHS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007037311.2 | 0.0 | PREDICTED: transcription factor TCP14 | ||||
Swissprot | Q93Z00 | 2e-67 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A061FY58 | 0.0 | A0A061FY58_THECC; TCP domain-like protein I | ||||
STRING | EOY21812 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3915 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47620.1 | 2e-50 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG013943t1 |
Entrez Gene | 18604657 |
Publications ? help Back to Top | |||
---|---|---|---|
|