PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG013940t1 | ||||||||
Common Name | TCM_013940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 27348.9 Da PI: 6.7946 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.2 | 0.00016 | 35 | 84 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr + erE+ R+++N+ f L l ++ ++ + Ka+iL +A++ +k+L Thecc1EG013940t1 35 RRIHKAEREKLKREHLNELFLDLANALDPN----QPNNGKASILCEATRLLKDL 84 788999*********************887....56799999*****9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.14E-10 | 32 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.34E-4 | 32 | 84 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-6 | 34 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.842 | 34 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGSEAPAPLV EKTIAAVETS VGRSCAPKTK GKVPRRIHKA EREKLKREHL NELFLDLANA 60 LDPNQPNNGK ASILCEATRL LKDLFGQIET LKKENACLLS ESHYVSIEKN ELKEENSTLE 120 TQIQKLQSEI GTRVAQSKPD LNEPPLGFQQ SELSSHFRGD RPGLPAVEPA LQQASALLVV 180 PIHPDIQAYP VPDSMQPTAN TNSIVSKPHA RYPTPADSWP SQLLGKQSAI RNEFGLDDIS 240 RSGDRGAANL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007037304.1 | 0.0 | PREDICTED: transcription factor bHLH47 | ||||
Refseq | XP_007037305.1 | 0.0 | PREDICTED: transcription factor bHLH47 | ||||
Swissprot | Q9SN74 | 2e-65 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A061FX23 | 0.0 | A0A061FX23_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 | ||||
STRING | EOY21806 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11720 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 9e-68 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG013940t1 |
Entrez Gene | 18604655 |