PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG013860t1
Common NameTCM_013860
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 613aa    MW: 66371.4 Da    PI: 7.443
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG013860t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30267326159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Thecc1EG013860t1 267 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGTHNHP 326
                       58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31252328IPR003657WRKY domain
SuperFamilySSF1182902.22E-27260328IPR003657WRKY domain
PROSITE profilePS5081128.461262328IPR003657WRKY domain
SMARTSM007741.4E-36267327IPR003657WRKY domain
PfamPF031067.5E-27268326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MEEDLIKRSD HGGAVKEEKR ADSSGDEEAA TGSREEVVAK VGNKRVYRED DDRKPSSPAQ  60
KDLSSSKQVS VKADTQRFST EPDSMASSSS RKEQDSQLES AKAEMGEVRE ENQRLKMYLN  120
RIMKDYQSLQ MQFYDIVRQD AKRSTATTNN DHQEVEEPEL VSLTLGRFSS DSKTDDKNKT  180
SSQGKEDERG KQGLSLGLDY KFEASKSDVD EPNPSPTNSS QEPKEEETWP PSKVLKTMRS  240
GDDEILQQNP VKKARVCVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTVAPSCP  300
VRKQVQRCAE DMSILITTYE GTHNHPLPMS ATAMASTTSA AVSMLLSGSS SSSQPGSSIP  360
STANTIPANL QGLNFYLSDN SNSKFYLPNS SLSASSSHPT ITLDLTSTLS SSSFPFNKFS  420
SAYSTTARYP STSLSFGSSE SNTVSWGNGL LSYGSTQPYM KNQIGALNIG RPKTMENIIY  480
QSFMQKNNLN PPHQPLPDTI AAATKAITAD PNFQSALAAA LTSIIGTGNN GGATPPTGDK  540
LGQELNWGEK TPPVTSSCSQ TVKGNGCATS FLNKSPSTTS QPGTLMFLPP SLPFSTPKSA  600
SASHGDTRNH SN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-212673281777Probable WRKY transcription factor 4
2lex_A2e-212673281777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037253.20.0PREDICTED: probable WRKY transcription factor 61
TrEMBLA0A061G4200.0A0A061G420_THECC; WRKY DNA-binding protein 72, putative
STRINGEOY217540.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-71WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]