PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG013117t2 | ||||||||
Common Name | TCM_013117 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 424aa MW: 46469.5 Da PI: 8.9198 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.7 | 4.5e-32 | 242 | 295 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Thecc1EG013117t2 242 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 295 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.63E-15 | 238 | 296 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 240 | 296 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.9E-24 | 242 | 295 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-7 | 243 | 294 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MSHKGGFSKQ SLNRIPDLSL HISPPNSAPS SICTGTNEGD SSFDIWRKDD GLKSHSDSSI 60 KAGSQADTEL SLANPASSAL EAESPWQRNF AGGVTDDDQI KHRNLLKRGN TNSGQLSNIN 120 HGISLLDVSG LKPIKGIPVY NNSMSFPFSS SDSLVDMDPN KLRFYHQSCP SYNCSSSTSA 180 VLHSPDAYRI GSAPRFNGIS METLRPQFHH QYTQYGAADL CNGMIRSRFM PKLQSKRTMR 240 APRMRWTSSL HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTVKSTD 300 KPAASSDGSG EEDYLPARNT ISQIANCSVN QRSSASPNLS IQQDNGHSPT NLWSNSSRGV 360 WLSSSRNPDG FRPDAPSSQP GNQIEESSFA KQKILTGSSL ELHNPSLDFS LGRPDWQRKE 420 RDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-17 | 243 | 297 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 243 | 297 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 243 | 297 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 243 | 297 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007036994.2 | 0.0 | PREDICTED: transcription repressor KAN1 isoform X2 | ||||
TrEMBL | A0A061FVC1 | 0.0 | A0A061FVC1_THECC; Homeodomain-like superfamily protein, putative isoform 2 | ||||
STRING | EOY21494 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 6e-65 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG013117t2 |
Entrez Gene | 18604445 |
Publications ? help Back to Top | |||
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