PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG013117t1
Common NameTCM_013117
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 425aa    MW: 46556.6 Da    PI: 8.9198
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG013117t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.5e-32242295255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Thecc1EG013117t1 242 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 295
                       9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.65E-15238296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28240296IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-24242295IPR006447Myb domain, plants
PfamPF002496.2E-7243294IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MSHKGGFSKQ SLNRIPDLSL HISPPNSAPS SICTGTNEGD SSFDIWRKDD GLKSHSDSSI  60
KAGSQADTEL SLANPASSAL EAESPWQRNF AGGVTDDDQI KHRNLLKRGN TNSGQLSNIN  120
HGISLLDVSG LKPIKGIPVY NNSMSFPFSS SDSLVDMDPN KLRFYHQSCP SYNCSSSTSA  180
VLHSPDAYRI GSAPRFNGIS METLRPQFHH QYTQYGAADL CNGMIRSRFM PKLQSKRTMR  240
APRMRWTSSL HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTVKSTD  300
KPAASSDGSG EEDYLPARNT ISQIANCSVN QRSSASPNLS IQQDNGHSPT NLWSNSSSRG  360
VWLSSSRNPD GFRPDAPSSQ PGNQIEESSF AKQKILTGSS LELHNPSLDF SLGRPDWQRK  420
ERDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-17243297357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-17243297357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-17243297357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-17243297357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973894.10.0PREDICTED: transcription repressor KAN1 isoform X1
TrEMBLA0A061G3870.0A0A061G387_THECC; Homeodomain-like superfamily protein, putative isoform 1
STRINGEOY214940.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17814510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.13e-59G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]