PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG012631t1 | ||||||||
Common Name | TCM_012631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 26827.8 Da PI: 8.3633 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 48 | 95 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed++l+d+++++G g+W+ ++ g+ R++k+c++rw +yl Thecc1EG012631t1 48 KGAWSKLEDQKLIDYIQKHGEGCWRYLPQAAGLLRCGKSCRLRWVNYL 95 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 101 | 145 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++ Thecc1EG012631t1 101 RGNFGEDEEELIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTH 145 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-22 | 39 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.235 | 43 | 95 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-27 | 47 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-11 | 47 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 48 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.78E-9 | 50 | 95 | No hit | No description |
PROSITE profile | PS51294 | 26.503 | 96 | 150 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-26 | 98 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-16 | 100 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 101 | 145 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.11E-11 | 103 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MPIPSLAFSP DFGPLLSSDL ICYLHWGFSL FFLFPMRKPC CEKKETNKGA WSKLEDQKLI 60 DYIQKHGEGC WRYLPQAAGL LRCGKSCRLR WVNYLRPDLK RGNFGEDEEE LIIKLHALLG 120 NRWSLIAGRL PGRTDNEVKN YWNTHIKRKL LQKGIDPNNR KLVLSSISIA KSKMSNESNS 180 STVDSGSDDS NQDMKFASGS ESNTMSSLPD LNLDLTIAPP PPLPLMEERQ LINLDSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 48 | 150 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007036734.1 | 1e-175 | PREDICTED: myb-related protein 308 | ||||
Swissprot | P81393 | 7e-78 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A061FUQ8 | 1e-173 | A0A061FUQ8_THECC; R2R3 MYB C2 repressor 2 protein | ||||
STRING | EOY21235 | 1e-174 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-78 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG012631t1 |
Entrez Gene | 18604283 |
Publications ? help Back to Top | |||
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