PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG012571t2

Common Name

TCM_012571

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB

Protein Properties

Length: 701aa MW: 80691.1 Da PI: 9.6895

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG012571t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	220	264	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+eEd+ l+ v++ G +W I +g +Rt+ qc r+q Thecc1EG012571t2 220 NPWTAEEDKNLLFIVQEKGISNWFDIVVSLGSNRTPFQCLARYQR 264 58*****************************************96 PP
2	Myb_DNA-binding	43.1	9.5e-14	273	316	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd++l av+ +G +W ++a+t+ gRt+ qc +rw k Thecc1EG012571t2 273 REWTEEEDDQLRIAVEVFGECDWQSVASTLK-GRTGTQCSNRWIK 316 68**************************9.*********87 PP
3	Myb_DNA-binding	53	8e-17	326	369	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT +Ed++l+ av ++G+++W++Ia+ ++ gRt qc++rw + Thecc1EG012571t2 326 GRWTHDEDKRLKVAVMLFGPKNWRKIAEVIP-GRTQVQCRERWVN 369 8****************************.*********87 PP
4	Myb_DNA-binding	48.1	2.6e-15	378	421	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT+eEd++l a++++G W+++a++m+ Rt++qc rw ++ Thecc1EG012571t2 378 GRWTKEEDLRLEAAIEEHGYY-WSKVAACMP-SRTDNQCWRRWKTL 421 89***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.586	117	213	IPR017877	Myb-like domain
SMART	SM00717	4.8E-5	118	215	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-7	118	137	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-7	185	215	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.33E-11	195	245	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.653	214	266	IPR017877	Myb-like domain
SMART	SM00717	3.1E-6	218	268	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-13	221	275	IPR009057	Homeodomain-like
CDD	cd00167	6.20E-5	221	266	No hit	No description
Pfam	PF13921	3.6E-7	222	268	No hit	No description
SuperFamily	SSF46689	4.67E-19	246	321	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.831	267	318	IPR017930	Myb domain
SMART	SM00717	4.8E-11	271	320	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-11	273	316	IPR001005	SANT/Myb domain
CDD	cd00167	3.01E-9	274	318	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.8E-16	276	321	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.346	319	375	IPR017930	Myb domain
SuperFamily	SSF46689	1.7E-26	323	418	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-18	323	371	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-15	324	373	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-15	326	369	IPR001005	SANT/Myb domain
CDD	cd00167	3.17E-12	327	371	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-17	372	422	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-12	376	424	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-13	378	421	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.644	378	426	IPR017930	Myb domain
CDD	cd00167	1.11E-10	379	421	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MTDPPLRTPP SRRLLWRIPT ARMIWKFSGV YGVVLRFQWT FVSLCLFSLP ALFLQFLLMT 60 MLKMISRLFA LSRGGFRLIL AMLLQVNDKN VSADYGPPEN SSVTNYRMAL TKFPLALQRK 120 KWSREERENL VKGIRQQFQE SALQVSVDWF SSADGSSGDG SNLDDIIATV KDLEITPERI 180 REFLPKVNWD QLASMYVKGR SGAECETRWL NHEDPLINCN PWTAEEDKNL LFIVQEKGIS 240 NWFDIVVSLG SNRTPFQCLA RYQRSLNACI LKREWTEEED DQLRIAVEVF GECDWQSVAS 300 TLKGRTGTQC SNRWIKSLHP TRQRVGRWTH DEDKRLKVAV MLFGPKNWRK IAEVIPGRTQ 360 VQCRERWVNS LDPALNLGRW TKEEDLRLEA AIEEHGYYWS KVAACMPSRT DNQCWRRWKT 420 LHPKAVPLLQ EARRIRKATL VSNFVDRESE RPALGPNDFY IPLQLTNSTS EPENTNLPSE 480 GKRKERRRII SAEDFENLPS SKKVEKRGNS SLRQHSRSRK RNELSGAKDD ATLASFLQDK 540 LKKNIPSYAD GDEMKLAGFL RNKSKKRRHQ IAENAHLSIM KGPEQRDKTN QIQFGLQRCE 600 AKTNCDGVIP ENSMFRSSLK QTIMSSDMNI VGDDIVNDTV APHEVVREPD RIDQEGNCEA 660 DGITLVQLRK RLKKRGPASS CMRRESELPS KELDEPRHND *

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MTDPPLRTPP SRRLLWRIPT ARMIWKFSGV YGVVLRFQWT FVSLCLFSLP ALFLQFLLMT  60
MLKMISRLFA LSRGGFRLIL AMLLQVNDKN VSADYGPPEN SSVTNYRMAL TKFPLALQRK  120
KWSREERENL VKGIRQQFQE SALQVSVDWF SSADGSSGDG SNLDDIIATV KDLEITPERI  180
REFLPKVNWD QLASMYVKGR SGAECETRWL NHEDPLINCN PWTAEEDKNL LFIVQEKGIS  240
NWFDIVVSLG SNRTPFQCLA RYQRSLNACI LKREWTEEED DQLRIAVEVF GECDWQSVAS  300
TLKGRTGTQC SNRWIKSLHP TRQRVGRWTH DEDKRLKVAV MLFGPKNWRK IAEVIPGRTQ  360
VQCRERWVNS LDPALNLGRW TKEEDLRLEA AIEEHGYYWS KVAACMPSRT DNQCWRRWKT  420
LHPKAVPLLQ EARRIRKATL VSNFVDRESE RPALGPNDFY IPLQLTNSTS EPENTNLPSE  480
GKRKERRRII SAEDFENLPS SKKVEKRGNS SLRQHSRSRK RNELSGAKDD ATLASFLQDK  540
LKKNIPSYAD GDEMKLAGFL RNKSKKRRHQ IAENAHLSIM KGPEQRDKTN QIQFGLQRCE  600
AKTNCDGVIP ENSMFRSSLK QTIMSSDMNI VGDDIVNDTV APHEVVREPD RIDQEGNCEA  660
DGITLVQLRK RLKKRGPASS CMRRESELPS KELDEPRHND *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	8e-29	188	412	6	155	MYB PROTO-ONCOGENE PROTEIN
1h89_C	8e-29	188	412	6	155	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	668	674	RKRLKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973755.1	0.0	PREDICTED: myb-like protein L
TrEMBL	A0A061FVF2	0.0	A0A061FVF2_THECC; Myb domain protein 4r1, putative isoform 2
STRING	EOY21190	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-155	myb domain protein 4r1

Link Out ? help Back to Top
Phytozome	Thecc1EG012571t2
Entrez Gene	18604254

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]