PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG012571t1

Common Name

TCM_012571

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB

Protein Properties

Length: 928aa MW: 105917 Da PI: 5.8119

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG012571t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.1e-07	447	491	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+eEd+ l+ v++ G +W I +g +Rt+ qc r+q Thecc1EG012571t1 447 NPWTAEEDKNLLFIVQEKGISNWFDIVVSLGSNRTPFQCLARYQR 491 58*****************************************96 PP
2	Myb_DNA-binding	42.7	1.3e-13	500	543	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd++l av+ +G +W ++a+t+ gRt+ qc +rw k Thecc1EG012571t1 500 REWTEEEDDQLRIAVEVFGECDWQSVASTLK-GRTGTQCSNRWIK 543 68**************************9.*********87 PP
3	Myb_DNA-binding	52.5	1.1e-16	553	596	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT +Ed++l+ av ++G+++W++Ia+ ++ gRt qc++rw + Thecc1EG012571t1 553 GRWTHDEDKRLKVAVMLFGPKNWRKIAEVIP-GRTQVQCRERWVN 596 8****************************.*********87 PP
4	Myb_DNA-binding	47.7	3.6e-15	605	648	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT+eEd++l a++++G W+++a++m+ Rt++qc rw ++ Thecc1EG012571t1 605 GRWTKEEDLRLEAAIEEHGYY-WSKVAACMP-SRTDNQCWRRWKTL 648 89***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.586	344	440	IPR017877	Myb-like domain
SMART	SM00717	4.8E-5	345	442	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-11	348	364	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-11	413	453	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.59E-11	422	472	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.653	441	493	IPR017877	Myb-like domain
SMART	SM00717	3.1E-6	445	495	IPR001005	SANT/Myb domain
CDD	cd00167	4.68E-5	448	493	No hit	No description
Pfam	PF13921	5.1E-7	449	495	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-13	454	503	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.81E-19	474	548	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.831	494	545	IPR017930	Myb domain
SMART	SM00717	4.8E-11	498	547	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-11	500	543	IPR001005	SANT/Myb domain
CDD	cd00167	1.91E-9	501	545	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-15	504	548	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.346	546	602	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-18	550	598	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.27E-26	550	645	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-15	551	600	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-15	553	596	IPR001005	SANT/Myb domain
CDD	cd00167	1.91E-12	554	598	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-17	599	649	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-12	603	651	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-13	605	648	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.644	605	653	IPR017930	Myb domain
CDD	cd00167	6.47E-11	606	648	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 928 aa Download sequence Send to blast
MSLHDQYDTG KEKDREAEEV DEEEEELSIS DNDDGFDEDM EALKQACLRT GADLNDLQIT 60 ASDNDRPSTS DAAVSSAALA YTDSEDDMEI FRSIRSRFAL SVDVCEPLSI QPPCTLPPIS 120 SDDDAEDDFE TLRVIQRRFS AYSSNDTQGI STEDHIEKTE PIYMTSTPLQ DATCNDICER 180 FQDYEKAGNI SHLLSGNAEM QPVGLVQWDH SDANELSTLA DNSSRFPKSA QQLIDAIKKN 240 RSYQKFLRSK LTQIESKIEE NKKLKERVKI LKDFQVSCKK ITGRSLSINK DPRIQLISAR 300 KSRTSKDPEL LQVNDKNVSA DYGPPENSSV TNYRMALTKF PLALQRKKWS REERENLVKG 360 IRQQFQESAL QVSVDWFSSA DGSSGDGSNL DDIIATVKDL EITPERIREF LPKVNWDQLA 420 SMYVKGRSGA ECETRWLNHE DPLINCNPWT AEEDKNLLFI VQEKGISNWF DIVVSLGSNR 480 TPFQCLARYQ RSLNACILKR EWTEEEDDQL RIAVEVFGEC DWQSVASTLK GRTGTQCSNR 540 WIKSLHPTRQ RVGRWTHDED KRLKVAVMLF GPKNWRKIAE VIPGRTQVQC RERWVNSLDP 600 ALNLGRWTKE EDLRLEAAIE EHGYYWSKVA ACMPSRTDNQ CWRRWKTLHP KAVPLLQEAR 660 RIRKATLVSN FVDRESERPA LGPNDFYIPL QLTNSTSEPE NTNLPSEGKR KERRRIISAE 720 DFENLPSSKK VEKRGNSSLR QHSRSRKRNE LSGAKDDATL ASFLQDKLKK NIPSYADGDE 780 MKLAGFLRNK SKKRRHQIAE NAHLSIMKGP EQRDKTNQIQ FGLQRCEAKT NCDGVIPENS 840 MFRSSLKQTI MSSDMNIVGD DIVNDTVAPH EVVREPDRID QEGNCEADGI TLVQLRKRLK 900 KRGPASSCMR RESELPSKEL DEPRHND*

Sequence ? help Back to Top

Protein Sequence Length: 928 aa Download sequence Send to blast

MSLHDQYDTG KEKDREAEEV DEEEEELSIS DNDDGFDEDM EALKQACLRT GADLNDLQIT  60
ASDNDRPSTS DAAVSSAALA YTDSEDDMEI FRSIRSRFAL SVDVCEPLSI QPPCTLPPIS  120
SDDDAEDDFE TLRVIQRRFS AYSSNDTQGI STEDHIEKTE PIYMTSTPLQ DATCNDICER  180
FQDYEKAGNI SHLLSGNAEM QPVGLVQWDH SDANELSTLA DNSSRFPKSA QQLIDAIKKN  240
RSYQKFLRSK LTQIESKIEE NKKLKERVKI LKDFQVSCKK ITGRSLSINK DPRIQLISAR  300
KSRTSKDPEL LQVNDKNVSA DYGPPENSSV TNYRMALTKF PLALQRKKWS REERENLVKG  360
IRQQFQESAL QVSVDWFSSA DGSSGDGSNL DDIIATVKDL EITPERIREF LPKVNWDQLA  420
SMYVKGRSGA ECETRWLNHE DPLINCNPWT AEEDKNLLFI VQEKGISNWF DIVVSLGSNR  480
TPFQCLARYQ RSLNACILKR EWTEEEDDQL RIAVEVFGEC DWQSVASTLK GRTGTQCSNR  540
WIKSLHPTRQ RVGRWTHDED KRLKVAVMLF GPKNWRKIAE VIPGRTQVQC RERWVNSLDP  600
ALNLGRWTKE EDLRLEAAIE EHGYYWSKVA ACMPSRTDNQ CWRRWKTLHP KAVPLLQEAR  660
RIRKATLVSN FVDRESERPA LGPNDFYIPL QLTNSTSEPE NTNLPSEGKR KERRRIISAE  720
DFENLPSSKK VEKRGNSSLR QHSRSRKRNE LSGAKDDATL ASFLQDKLKK NIPSYADGDE  780
MKLAGFLRNK SKKRRHQIAE NAHLSIMKGP EQRDKTNQIQ FGLQRCEAKT NCDGVIPENS  840
MFRSSLKQTI MSSDMNIVGD DIVNDTVAPH EVVREPDRID QEGNCEADGI TLVQLRKRLK  900
KRGPASSCMR RESELPSKEL DEPRHND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	2e-28	415	639	6	155	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-28	415	639	6	155	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	895	901	RKRLKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973755.1	0.0	PREDICTED: myb-like protein L
TrEMBL	A0A061FUM3	0.0	A0A061FUM3_THECC; Myb domain protein 4r1, putative isoform 1
STRING	EOY21190	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6504	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	myb domain protein 4r1

Link Out ? help Back to Top
Phytozome	Thecc1EG012571t1
Entrez Gene	18604254

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]