PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012484t1
Common NameTCM_012484
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NF-X1
Protein Properties Length: 1083aa    MW: 117776 Da    PI: 8.069
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012484t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X124.84.7e-08275293119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H+C+ +CH GpC+pC+
  Thecc1EG012484t1 275 CGRHRCELICHVGPCDPCQ 293
                       ******************7 PP
2zf-NF-X118.73.8e-06339356118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+H C ++CH+GpC+ C
  Thecc1EG012484t1 339 CGNHNCAEICHPGPCGDC 356
                       ****************99 PP
3zf-NF-X117.31e-05493511119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H+C++lCH G CppC 
  Thecc1EG012484t1 493 CGHHSCESLCHSGHCPPCL 511
                       ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.71E-796166No hitNo description
PROSITE profilePS500168.938104165IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.539107163IPR001841Zinc finger, RING-type
PROSITE patternPS013590107162IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.25E-5196258No hitNo description
SMARTSM004380.023220238IPR000967Zinc finger, NF-X1-type
PfamPF014228.1222237IPR000967Zinc finger, NF-X1-type
CDDcd060081.00E-10265313No hitNo description
SMARTSM004381.1E-4275294IPR000967Zinc finger, NF-X1-type
PfamPF014227.8E-6275292IPR000967Zinc finger, NF-X1-type
CDDcd060086.04E-9329372No hitNo description
SMARTSM004381.2E-4339358IPR000967Zinc finger, NF-X1-type
PfamPF014221.8E-4339356IPR000967Zinc finger, NF-X1-type
CDDcd060085.43E-13387435No hitNo description
SMARTSM004385.5E-4397416IPR000967Zinc finger, NF-X1-type
PfamPF014227.0E-4399415IPR000967Zinc finger, NF-X1-type
PfamPF0142218455466IPR000967Zinc finger, NF-X1-type
CDDcd060083.50E-8483526No hitNo description
SMARTSM004380.0014493512IPR000967Zinc finger, NF-X1-type
PfamPF014226.2E-4493510IPR000967Zinc finger, NF-X1-type
CDDcd060085.56E-6540588No hitNo description
SMARTSM004380.036550568IPR000967Zinc finger, NF-X1-type
PfamPF014223.5550567IPR000967Zinc finger, NF-X1-type
SMARTSM004382.2603633IPR000967Zinc finger, NF-X1-type
PfamPF014220.067603618IPR000967Zinc finger, NF-X1-type
CDDcd060081.59E-5631680No hitNo description
PfamPF0142212635661IPR000967Zinc finger, NF-X1-type
SMARTSM004380.63642663IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3309.5E-5881932IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1083 aa     Download sequence    Send to blast
MSFQGRNRSR NPSQSTRQEW VAGGYSSTAT TVVSNSAATF NSTPNVSHTS TQNDNRYRKI  60
GRPTNHRRDR EKERNENHVA VKKEMDPNLP QLVQEIQDKL IKSTVECMIC YDTVRRSAPI  120
WSCSSCYSIF HLNCIKKWAR APTSVDLVVE KNQGFNWRCP GCQSVQLTSS KEIRYVCFCG  180
KRTDPPSDLY LTPHSCGEPC GKPLEKVLGL GAGVMKDELC PHVCVLQCHP GPCPPCKAFS  240
PPRLCPCGKK VITTRCSDRK PVLTCGQRCD KLLECGRHRC ELICHVGPCD PCQILINAPC  300
FCRKKVEFVI CGDMAVKGEV KAEDGIFSCS STCGEKLRCG NHNCAEICHP GPCGDCELMP  360
SKIKSCYCGK RSLQEQRQSC LDPIPTCSEV CAKFLPCRVH QCDQVCHSGD CPPCSVLVTQ  420
KCRCGSTSRR VECYKTTLEN ERFTCDKPCG HKKNCGRHRC SERCCPLSNS NNLPSGDWDP  480
HFCHMACGKK LRCGHHSCES LCHSGHCPPC LETIFTDLTC ACGRTSIPPP LPCGTPPPSC  540
QLPCSVPQPC GHSSSHSCHF GDCPPCSVPV AKECIGGHVV LRNIPCGSKD IRCNKLCGKT  600
RQCGLHACGR TCHLAPCDIS SGSEPGFRTS CGQTCGAPRR DCRHTCTAPC HPSAPCPDVR  660
CDSRVTITCS CGRITASVPC DAGGSTSSFN ADTVYEASII QKLPVPLQPV DSTGKKIPLG  720
QRKLMCDDEC AKLDRKRVLA DAFDITSPNL DALHFGENSV TSELLSDLYR RDAKWVLAIE  780
ERCKFLVLGK SRGTATGLKI HVFCPMLKDK RDAVRIIAER WKLAVSAAGW EPKRFIVVHV  840
TPKSKPPPRI IGVKGATGVG GLHPPVFDPL VDMDPRLVVS FLDLPREADI SALVLRFGGE  900
CELVWLNDKN ALAVFSDPAR ASTAMRRLDH GSVYYGAVIF VQSAGTSVAS TANNAWGGAG  960
ASSALKGNPW KKAVVQELGW REDSWGSEES YGGTSDPGSV WKAKETPIAS SINRWSVLDS  1020
ERGLSSFSRT VQTEDPSKLA GVLSNSGMDS NTANSNSAGL PGGGFNEPEP SEVVDDWEKA  1080
YE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036625.20.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A061FV500.0A0A061FV50_THECC; NF-X-like 1
STRINGEOY211260.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]