PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012362t1
Common NameTCM_012362
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 279aa    MW: 30983.5 Da    PI: 7.1309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012362t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.6e-08166213455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Thecc1EG012362t1 166 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 213
                       8*************************9....35599999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.44E-9160217No hitNo description
SuperFamilySSF474593.4E-16160230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.097162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15162224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-5166213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-8168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MADFTSDFQS FKQSFSFLDI DPAMESLNQF AELSPGVIDN SALNFQSFLP FSNDSFFSNQ  60
APEIPGNNWG ENLPGFIHHS NQSSVVSVAQ PTVTSKTEFH ESKKRKALDV SESSSGNSSS  120
PQVSESGIKR RNNPGRGKRA RSNEKGEEKP KEVVHVRARR GQATDSHSLA ERVRRGKINE  180
RLRCLQDIVP GCYKTMGMAV MLDEIINYVQ SLQNQVEFLS MKLTAASTYY DFNSESDAME  240
KMQRAKAQEA KELDRLMRSE GYVGGLACFH SAAWSSLT*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036544.20.0PREDICTED: transcription factor BEE 3
SwissprotQ8GWK72e-74BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A061FU690.0A0A061FU69_THECC; BR enhanced expression 1
STRINGEOY210450.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-68BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]