PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG012350t1

Common Name

TCM_012350

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 331aa MW: 37058.6 Da PI: 8.4263

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG012350t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.3	9.9e-56	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL +kv++ +++ ++i +vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++ Thecc1EG012350t1 5 LPPGFRFHPTDEELITYYLSHKVSDVSFTS-KAIVDVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIF 96 79***********************999.88***********999999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 + g lvg+kktLvfykgrapkgek++Wvmheyrle Thecc1EG012350t1 97 R-AGILVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.15E-63	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	59.909	5	151	IPR003441	NAC domain
Pfam	PF02365	1.1E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIT YYLSHKVSDV SFTSKAIVDV DLNKCEPWDL PAKASMGEKE 60 WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRAGI LVGMKKTLVF YKGRAPKGEK 120 SNWVMHEYRL ENKHPFRTTK EEWVVCRVFQ KSAAVKKPQP TSSSQPSMGS PCDANSIVNE 180 FGDVELPNLN INANPSSTGF SNIATPGYNN STVNHGHLNM NLNVDFAAAS VPSSLTWPSS 240 ILSPNLSMNS LLLKALQLRN YQPRDVTTMD YSLLSSASQG IPQFGTGLSP NFQAATASSS 300 KVLDPTPQQQ QQQQQQQQQQ EQPFNMDSMW *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-56	4	157	19	174	NAC domain-containing protein 19
3swm_B	2e-56	4	157	19	174	NAC domain-containing protein 19
3swm_C	2e-56	4	157	19	174	NAC domain-containing protein 19
3swm_D	2e-56	4	157	19	174	NAC domain-containing protein 19
3swp_A	2e-56	4	157	19	174	NAC domain-containing protein 19
3swp_B	2e-56	4	157	19	174	NAC domain-containing protein 19
3swp_C	2e-56	4	157	19	174	NAC domain-containing protein 19
3swp_D	2e-56	4	157	19	174	NAC domain-containing protein 19
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847223	0.0	KC847223.1 Gossypium hirsutum NAC domain protein NAC46 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007036530.2	0.0	PREDICTED: NAC domain-containing protein 92
TrEMBL	A0A061FUV1	0.0	A0A061FUV1_THECC; NAC domain protein, IPR003441
STRING	EOY21031	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5527	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-113	NAC domain containing protein 58

Link Out ? help Back to Top
Phytozome	Thecc1EG012350t1
Entrez Gene	18604128

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]