PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG012338t1 | ||||||||
Common Name | TCM_012338 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | LBD | ||||||||
Protein Properties | Length: 253aa MW: 27075.6 Da PI: 7.8273 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.2 | 1.2e-28 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C ++p++ +++q++++ +++k++G++ +++l++a pe+ r+ +++sl+yeA+ r+ +Pv+G+vg++++++++l+ Thecc1EG012338t1 4 SCNGCRVLRKGCTESCSIRPCLqwiatAQSQANATLFLAKFYGRAGLINLINAGPENLRPGIFKSLLYEACGRIVNPVHGSVGLMWSGSWHLC 96 6*********************9999888999************************************************************* PP DUF260 89 qlkaelallke 99 +++++++l+++ Thecc1EG012338t1 97 EAAVDAVLRGS 107 ***99988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.558 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-23 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCTESCS IRPCLQWIAT AQSQANATLF LAKFYGRAGL INLINAGPEN 60 LRPGIFKSLL YEACGRIVNP VHGSVGLMWS GSWHLCEAAV DAVLRGSPIN KVSSELSDSS 120 PHLKSSCDIR HVSKEKNSDD GLRKIKSRGR FKRSAWKPKA QVEKEVCHES VSHESGLSQR 180 RSPGGDGAEG DTVSVETVEA SLAKADELAD GSDLELDLTL GFEPSPRKRA NSINGCDDAT 240 CGVQLDLGQG SC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007036523.2 | 0.0 | PREDICTED: LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 3e-72 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A061G1V5 | 0.0 | A0A061G1V5_THECC; LOB domain-containing protein 41, putative | ||||
STRING | EOY21024 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18027 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-74 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG012338t1 |
Entrez Gene | 18604122 |
Publications ? help Back to Top | |||
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