PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012087t1
Common NameTCM_012087
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 439aa    MW: 49669 Da    PI: 6.5105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012087t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.7e-19196242148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT eEd ll+++v+q+G + W++Ia++++ gR +kqc++rw+++l
  Thecc1EG012087t1 196 KGQWTIEEDRLLIQLVEQYGVRKWSLIAQMLP-GRIGKQCRERWHNHL 242
                       799*****************************.*************97 PP
2Myb_DNA-binding54.82.1e-17248290145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       ++ W++eEd+ l++a+ + G++ W+ Ia++++ gRt++++k++w+
  Thecc1EG012087t1 248 KDTWSEEEDKVLIQAHIEIGNK-WAEIAKRLP-GRTENSIKNHWN 290
                       679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129431.211191246IPR017930Myb domain
SuperFamilySSF466896.47E-32193289IPR009057Homeodomain-like
SMARTSM007173.7E-17195244IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-26197246IPR009057Homeodomain-like
CDDcd001672.00E-16199242No hitNo description
PfamPF139211.6E-19199257No hitNo description
SMARTSM007172.2E-16247295IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-22247295IPR009057Homeodomain-like
PROSITE profilePS5129420.483247297IPR017930Myb domain
CDDcd001676.37E-13250293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MELDAKLREN MTPPGQQPMF MKDELFPFET TPSSSSKGCY HWQDFHHLEH HHQVLDVNGS  60
SPNPVFGIQT ACYDPFDAFP YGCSANDVDF YECKPFADNV GAAGHGQVMD NFQGGGGYLN  120
LSQRNSDDVV MGSDSIGYMP FDFQGVKPVN FVVPDEVSCV STAENAYYKK VGMNKNRVLA  180
STKRTWKGRK KSNVVKGQWT IEEDRLLIQL VEQYGVRKWS LIAQMLPGRI GKQCRERWHN  240
HLRPDIKKDT WSEEEDKVLI QAHIEIGNKW AEIAKRLPGR TENSIKNHWN ATKRRQFSKR  300
KCRSKYPRGS ILQEYIKSLN LESSSSTRYQ EKPSTATNAA IADMNTSTKA PNHQPKALDF  360
CPTDRLVPEY DFNEVPDFCF DEKLLQESCS IDSLLDEIPS APPNVAGAAD PVDMALVMKN  420
EVKKELDLVE MISQQANM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-461942962104C-Myb DNA-Binding Domain
1msf_C1e-461942962104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6501062e-75HQ650106.1 Gossypium hirsutum clone BAC 067L14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036240.20.0PREDICTED: transcription factor MYB98
SwissprotQ9S7L21e-110MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A061FU730.0A0A061FU73_THECC; Myb119, putative
STRINGEOY207410.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-112myb domain protein 98
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]