PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG012077t2

Common Name

TCM_012077

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 375aa MW: 41421.6 Da PI: 7.0745

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG012077t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.4	4.1e-40	119	179	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+ Thecc1EG012077t2 119 HDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVA 179 6899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	113	173	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-33	120	177	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.189	123	177	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	125	161	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010067	Biological Process	procambium histogenesis
GO:0010087	Biological Process	phloem or xylem histogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
FTANSLADTN HFNPWISLSH LFSSSSLFFC TLVPLSQVLV KRERLLSREQ LFSFEYLAFC 60 LCWVGFVSMG LTSLQVCMDS SDWLQGTIHE ESGMDSSSPS GDMLACSRPL IERRLRPPHD 120 QALKCPRCDS THTKFCYYNN YSLSQPRYFC KTCRRYWTKG GTLRNIPVGG GCRKNKKVAS 180 KKSNDQSANS NNPGSSSHNP TDLHLSFPEM NLSHLNNMLG THGANNNFME SKYNSLLENP 240 RPIDFMESKL EAIVGSSRNY DFMGNGELGM VGGLGDMGHG LAPNLHGLCS PYGMSLDGNG 300 GTFLDTCQRI MLPYDANADQ HAVDVKPNTK LLSLDWQDQG CSDAGKDTYG YLNNLGSWSG 360 MMNNYGPSTT NPLV*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

FTANSLADTN HFNPWISLSH LFSSSSLFFC TLVPLSQVLV KRERLLSREQ LFSFEYLAFC  60
LCWVGFVSMG LTSLQVCMDS SDWLQGTIHE ESGMDSSSPS GDMLACSRPL IERRLRPPHD  120
QALKCPRCDS THTKFCYYNN YSLSQPRYFC KTCRRYWTKG GTLRNIPVGG GCRKNKKVAS  180
KKSNDQSANS NNPGSSSHNP TDLHLSFPEM NLSHLNNMLG THGANNNFME SKYNSLLENP  240
RPIDFMESKL EAIVGSSRNY DFMGNGELGM VGGLGDMGHG LAPNLHGLCS PYGMSLDGNG  300
GTFLDTCQRI MLPYDANADQ HAVDVKPNTK LLSLDWQDQG CSDAGKDTYG YLNNLGSWSG  360
MMNNYGPSTT NPLV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00580	DAP	Transfer from AT5G62940	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017972331.1	0.0	PREDICTED: dof zinc finger protein DOF5.6
Swissprot	Q9FM03	7e-59	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	A0A061FUJ4	0.0	A0A061FUJ4_THECC; F-box family protein isoform 2 (Fragment)
STRING	EOY20732	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	2e-49	Dof family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG012077t2
Entrez Gene	18603915

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]