PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012044t1
Common NameTCM_012044
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 211aa    MW: 23686.6 Da    PI: 9.2979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012044t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.54.3e-071592654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...............................TTS-STCHHHHHHHHHHHHHH CS
               HLH  6 nerErrRRdriNsafeeLrellPk.as............................kapskKlsKaeiLekAveYIksL 54
                      + +Er+RR +++   ++L +l+P+ ++                                + +s  + L + v YIk+L
  Thecc1EG012044t1 15 KTIERNRRIHMKALCFKLASLVPQqRFkpskvyiciyiellilslpsfflsqeylTDFWEIVSQTDQLDLGVAYIKHL 92
                      679*********************666999**********99999999999999888889999999999999999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-71437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-71539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-769111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-771112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKKSGGGEAS KPDRKTIERN RRIHMKALCF KLASLVPQQR FKPSKVYICI YIELLILSLP  60
SFFLSQEYLT DFWEIVSQTD QLDLGVAYIK HLRERIEKLK VIKEQMMKSV EASSNIMNNN  120
ASGGLGLPVV EIRDLGSSIE VILISGLNKN FMLYEVIGIL EQEGAEVVSA SFSTVGGKIF  180
HNLHAQVKIS RVGVDTSTVF QRLQELISYY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972432.11e-123PREDICTED: uncharacterized protein LOC18603887
TrEMBLA0A061FV241e-152A0A061FV24_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY206871e-152(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-20bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]