PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG012044t1 | ||||||||
Common Name | TCM_012044 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 23686.6 Da PI: 9.2979 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.5 | 4.3e-07 | 15 | 92 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...............................TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as............................kapskKlsKaeiLekAveYIksL 54 + +Er+RR +++ ++L +l+P+ ++ + +s + L + v YIk+L Thecc1EG012044t1 15 KTIERNRRIHMKALCFKLASLVPQqRFkpskvyiciyiellilslpsfflsqeylTDFWEIVSQTDQLDLGVAYIKHL 92 679*********************666999**********99999999999999888889999999999999999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-7 | 14 | 37 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-7 | 15 | 39 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-7 | 69 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-7 | 71 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MKKSGGGEAS KPDRKTIERN RRIHMKALCF KLASLVPQQR FKPSKVYICI YIELLILSLP 60 SFFLSQEYLT DFWEIVSQTD QLDLGVAYIK HLRERIEKLK VIKEQMMKSV EASSNIMNNN 120 ASGGLGLPVV EIRDLGSSIE VILISGLNKN FMLYEVIGIL EQEGAEVVSA SFSTVGGKIF 180 HNLHAQVKIS RVGVDTSTVF QRLQELISYY * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017972432.1 | 1e-123 | PREDICTED: uncharacterized protein LOC18603887 | ||||
TrEMBL | A0A061FV24 | 1e-152 | A0A061FV24_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative | ||||
STRING | EOY20687 | 1e-152 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-20 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG012044t1 |
Entrez Gene | 18603887 |
Publications ? help Back to Top | |||
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