PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG011985t1

Common Name

TCM_011985

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 447aa MW: 50592.8 Da PI: 8.9667

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011985t1	genome	CGD	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48150	3.93E-37	88	253	IPR011257	DNA glycosylase
Gene3D	G3DSA:1.10.340.30	6.0E-21	90	192	IPR011257	DNA glycosylase
CDD	cd00056	1.37E-30	94	253	No hit	No description
Pfam	PF00730	2.8E-11	95	238	IPR003265	HhH-GPD domain
SMART	SM00478	4.2E-17	99	264	IPR003265	HhH-GPD domain
Gene3D	G3DSA:1.10.1670.10	1.6E-16	193	253	IPR023170	Helix-turn-helix, base-excision DNA repair, C-terminal
SuperFamily	SSF57667	4.94E-6	275	306	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-4	276	305	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.614	279	306	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	281	301	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006284	Biological Process	base-excision repair
GO:0003676	Molecular Function	nucleic acid binding
GO:0003824	Molecular Function	catalytic activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MKMQKSRKRK QLGIDGHSKT PKITTEEPYP SHHRPTPDEC RSVRDELLAL HGFPAEFLKY 60 RHQRLIKTEP TIDAKSEPLN NNYDDGEESV LDGLVKTVLS QNTTELNSQK AFASLKSAFP 120 TWEDVLAAES KNLENAIRCG GLAPRKASCI KNVLRCLHER KGKLCFEYLR DLSIDEIKAE 180 LSNFKGVGPK TVACVLMFNL QQDDFPVDTH VFEIARAIGW VPATADRKKT YLHLNRRIPN 240 KLKFDLNCLL YTHDGQGTVE AGKTVKEKSV TRKLEKRKYE CQFCLKKFTN SQALGGHQNA 300 HKSERLKKRR MQLQPKSTNL SFVDEPPHDY SSVTQHCSLP SSNSRPPCVP EYTLFKEFLI 360 NFKTTLDQNQ NLYCSLADFC HSIPLPSHHD HFEEGTCGRH IVIKPSPSYI SKDCESLYTR 420 LGLAPPAIHS SSRNGNMVEL GKCKEG*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MKMQKSRKRK QLGIDGHSKT PKITTEEPYP SHHRPTPDEC RSVRDELLAL HGFPAEFLKY  60
RHQRLIKTEP TIDAKSEPLN NNYDDGEESV LDGLVKTVLS QNTTELNSQK AFASLKSAFP  120
TWEDVLAAES KNLENAIRCG GLAPRKASCI KNVLRCLHER KGKLCFEYLR DLSIDEIKAE  180
LSNFKGVGPK TVACVLMFNL QQDDFPVDTH VFEIARAIGW VPATADRKKT YLHLNRRIPN  240
KLKFDLNCLL YTHDGQGTVE AGKTVKEKSV TRKLEKRKYE CQFCLKKFTN SQALGGHQNA  300
HKSERLKKRR MQLQPKSTNL SFVDEPPHDY SSVTQHCSLP SSNSRPPCVP EYTLFKEFLI  360
NFKTTLDQNQ NLYCSLADFC HSIPLPSHHD HFEEGTCGRH IVIKPSPSYI SKDCESLYTR  420
LGLAPPAIHS SSRNGNMVEL GKCKEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4uob_A	6e-17	91	230	65	211	ENDONUCLEASE III-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	10	SRKRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007036109.2	0.0	PREDICTED: putative DNA glycosylase At3g47830
Refseq	XP_017973350.1	0.0	PREDICTED: putative DNA glycosylase At3g47830
Swissprot	F4JCQ3	1e-115	DG783_ARATH; Putative DNA glycosylase At3g47830
TrEMBL	A0A061G0N8	0.0	A0A061G0N8_THECC; DNA glycosylase superfamily protein isoform 1
STRING	EOY20609	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	3e-10	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG011985t1
Entrez Gene	18603837

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]