PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011973t1 | ||||||||
Common Name | TCM_011973 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | E2F/DP | ||||||||
Protein Properties | Length: 181aa MW: 20721.7 Da PI: 6.5076 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 54.1 | 2.5e-17 | 21 | 73 | 1 | 58 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnl 58 rk+ksL+ll+++fl+l+++++ + + l+e+a +L v +r RiYDi+NVLe+++l Thecc1EG011973t1 21 RKQKSLGLLCSNFLSLYNREDVELIGLDEAAAKL---GV--ERHRIYDIVNVLESVGL 73 79*****************999************...**..**************987 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.0004 | 99 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C++C k+ ++ s ++ Hi+ H Thecc1EG011973t1 99 FFCNICEKMIKDLSGFTAHIKDrH 122 67******************9777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.4E-19 | 17 | 73 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.88E-11 | 20 | 74 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.6E-14 | 21 | 115 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.4E-14 | 22 | 73 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:3.10.370.10 | 7.4E-4 | 92 | 150 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 101 | 122 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MPVSSSPSLP ESSSRHYTYS RKQKSLGLLC SNFLSLYNRE DVELIGLDEA AAKLGVERHR 60 IYDIVNVLES VGLAWLLETQ DHFLSNLMGR KKNKPEQIFF CNICEKMIKD LSGFTAHIKD 120 RHKKSRSCRK CNMIFTSDVD LLIHSDAKEC YDYLKRIELL SQDEIKTEDL ESSLEEVGEK 180 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021292037.1 | 8e-33 | E2F transcription factor-like E2FE isoform X1 | ||||
Refseq | XP_021292038.1 | 6e-33 | E2F transcription factor-like E2FE isoform X2 | ||||
TrEMBL | A0A061FTB9 | 1e-129 | A0A061FTB9_THECC; DP-E2F-like 1 | ||||
STRING | EOY20595 | 1e-130 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 2e-28 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011973t1 |
Entrez Gene | 18603827 |
Publications ? help Back to Top | |||
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