PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011971t2 | ||||||||
Common Name | TCM_011971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | E2F/DP | ||||||||
Protein Properties | Length: 357aa MW: 40072.9 Da PI: 9.4926 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 51.5 | 1.6e-16 | 1 | 54 | 13 | 71 |
E2F_TDP 13 flkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 fl+l+++++ + + l+e+a +L v +r RiYDi+NVLe+++++++k+kn+++wkg Thecc1EG011971t2 1 FLSLYNREDVELIGLDEAAAKL---GV--ERHRIYDIVNVLESVGVLTRKAKNKYTWKG 54 8999999888************...**..****************************98 PP | |||||||
2 | E2F_TDP | 77.2 | 1.5e-24 | 127 | 207 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+lltq+f+kl+ +s+++ ++l+e+a+ L+ + +++k+RR+YDi+NVL+++nliek ++k+++rw g Thecc1EG011971t2 127 RREKSLGLLTQNFVKLFVCSNAELISLDEAARLLLGNahntsIMRTKVRRLYDIANVLSSMNLIEKthtvdTRKPAFRWLG 207 689*******************************9999***999***********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 1.8E-13 | 1 | 54 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.1E-17 | 1 | 55 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.36E-11 | 1 | 52 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 2.9E-14 | 1 | 54 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.7E-23 | 124 | 208 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.4E-31 | 127 | 207 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 7.4E-20 | 129 | 207 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.7E-14 | 129 | 208 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
FLSLYNREDV ELIGLDEAAA KLGVERHRIY DIVNVLESVG VLTRKAKNKY TWKGFAAIPK 60 ALQDLKEEGF SSNFKNLDAN NNAKVSDDDD DDEDDEGFSN PNTGSQTETS KPTSVLKSSA 120 SSKIDNRREK SLGLLTQNFV KLFVCSNAEL ISLDEAARLL LGNAHNTSIM RTKVRRLYDI 180 ANVLSSMNLI EKTHTVDTRK PAFRWLGLSG KSDKGSADAL VLHESRKRAF GTDVTNIISK 240 RNKVDSSNEG NVKQCMKMQK QIKVENLVAV ADRRSWEDSK QGSKSYQFGP FAPVNLSRSG 300 NSENNVKRVH DWESLASTYR PQYHNQALRD LFSHYMEAWK SWYTEVAGKK PIQQIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 6e-33 | 13 | 199 | 32 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007036090.2 | 0.0 | PREDICTED: E2F transcription factor-like E2FE isoform X2 | ||||
Swissprot | Q8LSZ4 | 1e-134 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A061FUN3 | 0.0 | A0A061FUN3_THECC; DP-E2F-like 1 isoform 2 (Fragment) | ||||
STRING | EOY20591 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-137 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011971t2 |
Entrez Gene | 18603825 |
Publications ? help Back to Top | |||
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