PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011971t1 | ||||||||
Common Name | TCM_011971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | E2F/DP | ||||||||
Protein Properties | Length: 389aa MW: 43591.9 Da PI: 9.7506 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 75.9 | 4e-24 | 21 | 86 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+++++ + + l+e+a +L v +rRRiYDi+NVLe+++++++k+kn+++wkg Thecc1EG011971t1 21 RKQKSLGLLCSNFLSLYNREDVELIGLDEAAAKL---GV--ERRRIYDIVNVLESVGVLTRKAKNKYTWKG 86 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 77 | 1.8e-24 | 159 | 239 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+lltq+f+kl+ +s+++ ++l+e+a+ L+ + +++k+RR+YDi+NVL+++nliek ++k+++rw g Thecc1EG011971t1 159 RREKSLGLLTQNFVKLFVCSNAELISLDEAARLLLGNahntsIMRTKVRRLYDIANVLSSMNLIEKthtvdTRKPAFRWLG 239 689*******************************9999***999***********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.3E-26 | 17 | 87 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.04E-16 | 20 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.2E-29 | 21 | 86 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 6.1E-21 | 22 | 86 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.0E-23 | 156 | 240 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.4E-31 | 159 | 239 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 8.5E-20 | 161 | 239 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.65E-14 | 161 | 240 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MPVSSSSSLP ESSSRHYTYS RKQKSLGLLC SNFLSLYNRE DVELIGLDEA AAKLGVERRR 60 IYDIVNVLES VGVLTRKAKN KYTWKGFAAI PKALQDLKEE GFSSNFKNLD ANNNAKVSDD 120 DDDDEDDEGF SNPNTGSQTE TSKPTSVLKS SASSKIDNRR EKSLGLLTQN FVKLFVCSNA 180 ELISLDEAAR LLLGNAHNTS IMRTKVRRLY DIANVLSSMN LIEKTHTVDT RKPAFRWLGL 240 SGKSDKGSAD ALVLHESRKR AFGTDVTNII SKRNKVDSSN EGNVKQCMKM QKQIKVENLV 300 AVADRRSWED SKQGSKSYQF GPFAPVNLSR SGNSENNVKR VHDWESLAST YRPQYHNQAL 360 RDLFSHYMEA WKSWYTEVAG KKPIQQIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 3e-40 | 20 | 231 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007036090.2 | 0.0 | PREDICTED: E2F transcription factor-like E2FE isoform X2 | ||||
Swissprot | Q8LSZ4 | 1e-147 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A061FTS0 | 0.0 | A0A061FTS0_THECC; DP-E2F-like 1 isoform 1 | ||||
STRING | EOY20591 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6304 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-150 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011971t1 |
Entrez Gene | 18603825 |
Publications ? help Back to Top | |||
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