PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011907t1 | ||||||||
Common Name | TCM_011907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 487aa MW: 53243.1 Da PI: 5.3372 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ + g+ R++k+c++rw ++l Thecc1EG011907t1 19 KGPWTAAEDAILMEYVKKHGEGNWNAVQKNSGLMRCGKSCRLRWANHL 66 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.2e-16 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++ Thecc1EG011907t1 72 KGSFSPEEERIIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 115 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.964 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.77E-30 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-15 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.80E-11 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 26.179 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-16 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-15 | 72 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-26 | 74 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.50E-12 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MKSNSGVGSD RMISHGLKKG PWTAAEDAIL MEYVKKHGEG NWNAVQKNSG LMRCGKSCRL 60 RWANHLRPNL KKGSFSPEEE RIIIELHAKL GNKWARMAAQ LPGRTDNEIK NYWNTRMKRR 120 QRAGLPIYPQ EVGDDVAGIL LQQQQEQEQQ IQQYQGRKRP NSSSLSSFLS SSQGRKHDYI 180 SSFSFLDSMN LSSAGQNQAI SSCYSNLSHQ FKLYNNTGNN IDFALPLSPN SPFLPSSSDL 240 YNENITAQLS APSFQFIDSG SLDNTLSFSS LLMGAQTEPI DFVPGLKADL GSSQTPPRPT 300 TPASSYTSSG GVCLVAPSGN TINYCGLKGS SGLLDALLVE SRSLSRNERQ KNGEEFPQVI 360 DKEKGVMDAA NVENEEEEVD ANECVVETHR DDFSSCPSSI GLKSGDESIE EMNAMDDDLH 420 SLLNNFPSST PLPEWYTKST RISNNGSPSG NMALDAQQNV SPAVATTADL DWSLGSCSWK 480 NMPGIC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-32 | 17 | 120 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00287 | DAP | Transfer from AT2G32460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007046374.2 | 0.0 | PREDICTED: transcription factor GAMYB | ||||
TrEMBL | A0A061EBB9 | 0.0 | A0A061EBB9_THECC; Myb domain protein 101, putative | ||||
STRING | EOY02206 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5100 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 7e-76 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011907t1 |
Entrez Gene | 18610580 |
Publications ? help Back to Top | |||
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