PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011869t1 | ||||||||
Common Name | TCM_011869 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 435aa MW: 49144.6 Da PI: 4.9818 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105 | 9.3e-33 | 54 | 193 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 lp+G++F+P+d+e++++ L+k ve++k ++++ i++ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + Thecc1EG011869t1 54 LPRGVKFDPSDQEIIWHLLTKVgVEDSKphpfINEFIPtIENDdGICYTHPQKLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRKIHgddfgDV 145 799************888877644444476553333333666546**********.677888899******************8655555588 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tg++k+vl +g + g+kk++v+y + k+ekt+Wvmh+y+l Thecc1EG011869t1 146 RWHKTGRTKPVLL-DGVQRGCKKIMVLYmtMVKGGKPEKTNWVMHQYHL 193 9************.99************6634677777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-38 | 39 | 212 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.291 | 54 | 212 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-13 | 55 | 193 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MAGTWLVDGN RIATKIRSAS NPERVTWKSN PTRSCPSCHH TIDNSDVTQA WPGLPRGVKF 60 DPSDQEIIWH LLTKVGVEDS KPHPFINEFI PTIENDDGIC YTHPQKLPGV KQDGSVSHFF 120 HRAIKAYNTG TRKRRKIHGD DFGDVRWHKT GRTKPVLLDG VQRGCKKIMV LYMTMVKGGK 180 PEKTNWVMHQ YHLGTEEDEK DGEYVISKIF HQQQQIKQGD KCEQDLPEMT DTTIVKVDPV 240 TPKSVTPDPP RTGRQCHEYD QGQEYTIACI NPSAQVLSPK HPTMQYVEDY VQTECESSSH 300 NDLPDPENHL NQMLDNNNDN RAEEDPKWWD GESQYLLDSQ QLVEGLSLCD ELLQSQSPNR 360 DANVDDGALN SKPCLSDYAQ LGAEHLKKDL EECQNLEGDP ANIELDTPPE FRLSQLEFGS 420 QDSFIAWGGS KVID* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ914145 | 0.0 | JQ914145.1 Gossypium hirsutum NAC domain protein 14 (NAC14) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007046313.2 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A061EAY6 | 0.0 | A0A061EAY6_THECC; NAC domain protein, IPR003441 isoform 1 | ||||
STRING | EOY02145 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011869t1 |
Entrez Gene | 18610544 |