PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011857t3
Common NameTCM_011857
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 292aa    MW: 32419 Da    PI: 6.8643
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011857t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.48e-29222272151
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                       k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQ
  Thecc1EG011857t3 222 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQ 272
                       79************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.673219279IPR017930Myb domain
SuperFamilySSF466892.51E-14220273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-24220272IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-24222272IPR006447Myb domain, plants
PfamPF002495.1E-6224272IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MINMDYAKKM RRCHEYVEAL EEERRKIQVF QRELPLCLEL VTQAIEACKK EISGGSTTTD  60
YMQGQSECSE QTSSDGPVLE EFIPIKRSSD CSEEDDEQES RKSKDHDTNT KEKNVAAADK  120
KKSDWLRSVQ LWNNNQSPDP PLQEGAGKSG SAVEVKRNGG AFQPFHREKT VEKSVPSVGK  180
ANASATSTST TESGSRGGGG GEANNGNTNS KKEEKEGQPQ RKQRRCWSPE LHRRFLHALQ  240
QLGGSHVATP KQIRELMKVD GLTNDEVKSH LQAGLIRLCQ ISAFEQTLQL D*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046296.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ9FPE81e-97HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A061EAX00.0A0A061EAX0_THECC; Myb-like transcription factor family protein, putative isoform 3
STRINGEOY021280.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.15e-89G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]