PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011857t1 | ||||||||
Common Name | TCM_011857 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 389aa MW: 42594.1 Da PI: 8.1556 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103 | 1.8e-32 | 222 | 277 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Thecc1EG011857t1 222 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 277 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.641 | 219 | 279 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-28 | 220 | 280 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.76E-18 | 220 | 280 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-27 | 222 | 277 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-7 | 224 | 275 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MINMDYAKKM RRCHEYVEAL EEERRKIQVF QRELPLCLEL VTQAIEACKK EISGGSTTTD 60 YMQGQSECSE QTSSDGPVLE EFIPIKRSSD CSEEDDEQES RKSKDHDTNT KEKNVAAADK 120 KKSDWLRSVQ LWNNNQSPDP PLQEGAGKSG SAVEVKRNGG AFQPFHREKT VEKSVPSVGK 180 ANASATSTST TESGSRGGGG GEANNGNTNS KKEEKEGQPQ RKQRRCWSPE LHRRFLHALQ 240 QLGGSHVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PSPTVHNNAN AQAPQFVVVG 300 GIWVPPPEYA PMAATTASGE TASVTPTNGI YTPVAAPLPK LPQPSGAIVQ RPQRSQSEER 360 GSHSEGRVHS NSPSTSSSTH TTTDSPLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-13 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-13 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-13 | 222 | 275 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-13 | 222 | 275 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-13 | 222 | 275 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-13 | 222 | 275 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-13 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-13 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-13 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-13 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-13 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-13 | 222 | 275 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00160 | DAP | Transfer from AT1G25550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007046296.1 | 0.0 | PREDICTED: myb family transcription factor EFM | ||||
Swissprot | Q9FPE8 | 1e-112 | HHO3_ARATH; Transcription factor HHO3 | ||||
TrEMBL | A0A061EBX6 | 0.0 | A0A061EBX6_THECC; Myb-like transcription factor family protein, putative isoform 1 | ||||
STRING | EOY02128 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3491 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68670.1 | 1e-105 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011857t1 |
Entrez Gene | 18610532 |
Publications ? help Back to Top | |||
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