PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG011845t2

Common Name

TCM_011845

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 317aa MW: 35012.2 Da PI: 6.1259

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011845t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3.1e-10	71	109	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAAr+sR+RKka++++Le+ L++ + Thecc1EG011845t2 71 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLTQLEQ 109 788*************************97666665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.8E-8	64	114	No hit	No description
SMART	SM00338	4.7E-9	67	138	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	69	113	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	5.7E-7	69	113	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.08E-24	71	123	No hit	No description
SuperFamily	SSF57959	5.47E-7	71	114	No hit	No description
PROSITE pattern	PS00036	0	74	89	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.4E-32	156	229	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MYQKGTTFGA SLGNGHIENW ADSGLADNSQ QTDTSTDVDN DDKNQLNGVR HGAIITVDSV 60 DESKPKTGDQ KTLRRLAQNR EAARKSRLRK KAYVQQLENS RLRLTQLEQE LQRARQQGIF 120 ISSGLSGDHG HSVAGNGALA FDMDYAHWLD DHQRLINDLR SAVNSHMGDN ELRILVEGVM 180 AHYDEVFRLK SIGAKADVFH MLSGMWKTPA ERCFMWLGGF RSSELLKILG NHLEPLTDQQ 240 LMGICNLQQS SQQAEDALSQ GMEALQQSLV DTLSSACLGP AGSGNVADYM GQMAIAMGKL 300 ATLENFLHQA DLLRQQT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017971464.1	0.0	PREDICTED: transcription factor HBP-1b(c38) isoform X2
Swissprot	Q9SX27	1e-151	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A061EBV9	0.0	A0A061EBV9_THECC; BZIP transcription factor family protein isoform 2 (Fragment)
TrEMBL	A0A061ECH8	0.0	A0A061ECH8_THECC; BZIP transcription factor family protein isoform 1
STRING	EOY02112	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-140	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG011845t2
Entrez Gene	18610523

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]