PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011792t1
Common NameTCM_011792
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 605aa    MW: 65977.9 Da    PI: 7.0371
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011792t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-30249308159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Thecc1EG011792t1 249 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpTCPVRKQVQRCAEDMSILITTYEGNHNHP 308
                       58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31235310IPR003657WRKY domain
SuperFamilySSF1182904.32E-27242310IPR003657WRKY domain
PROSITE profilePS5081128.69244310IPR003657WRKY domain
SMARTSM007741.4E-36249309IPR003657WRKY domain
PfamPF031061.4E-26250308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MENNLEKSAL GNNVVFEEKI TKSGSSPGGE GDHVSVETNK GEHQREIKQE DDRSKPPSPN  60
KKDSIIKEED QLESAKAKMG EVKEENERLR LLLSQIMKDY QSLHMRFRDI LQQEEEAKKS  120
TETAPSHQGN EEHDLVFLSL GRSSGTESKK EEKKSSNLSN NGKEDEKPNG NEGLALGLEC  180
KFVPAGSTEK NPSPETSFGK QEEEEPAEIW PPSKILKTVR SGDEDAEEQM QFKKAARVSV  240
RARCDTPTMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVSPT CPVRKQVQRC AEDMSILITT  300
YEGNHNHPLP LSATAMASTT SAAASMLQSQ SSSSQPGLGT SVSAPNSTSF AAHLHGLNFN  360
FSHNSRPYQH YFPNSSISTT NSHPTITLDL TAPANSSYFT RLSNAPRYSS TCLNFSSSPS  420
SSLEGAINNP QTSWNTGHLN FGALSNHKNS FFGPLNNLGR QPPQEHLYQS YMQMTNQTPH  480
QQSLSETITA ATKAITSNPS FRSALATALT SFVGNGGGVP ILDNHSENEA KWGESLPLRT  540
ALHHAAVDKE VGCASSYLGK SSSVNSQQQQ QKQGSLLLFP TNSLPFPTSK STPGPPADTS  600
NQIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20236310174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3311783e-35AY331178.1 Theobroma cacao WRKY 15 (tcw15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971692.10.0PREDICTED: probable WRKY transcription factor 61
TrEMBLA0A061EBL70.0A0A061EBL7_THECC; WRKY transcription factor 72, putative
STRINGEOY020380.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2244145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-65WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]