PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011752t1
Common NameTCM_011752
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TCP
Protein Properties Length: 372aa    MW: 40142.6 Da    PI: 9.4862
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011752t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.19e-4051169289
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                       ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++     
  Thecc1EG011752t1  51 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAShlrnt 143
                       789******************************************************************999866666666664444444444 PP

               TCP  89 .........................k 89 
                                                 
  Thecc1EG011752t1 144 yfnpnfptqqlrmrsewernvlddsP 169
                       44444444444444444333333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-4155237IPR005333Transcription factor, TCP
PROSITE profilePS5136927.58257111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MIMDGENGIR RPNFPLQLLE KTEHQQEPPC SSSGNAEPSS KTASVAPKKP PPKRTSTKDR  60
HTKVEGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN  120
FTSLNISLRS SGSSMSASHL RNTYFNPNFP TQQLRMRSEW ERNVLDDSPA QQQHRRILFP  180
GVALSSDDSL NFPSSSSMNA FLQAKQELRD TSVNVAEEAD TSMGKKRRPD QHQDLSQNQV  240
GSYLLQSTTG SIPASHNPNP ATFWMVTNPS NQVISGSGAG DPMWTFPSAS NTNMYRGTMS  300
SGVHFMNFAT PMALLPGQQF GSGIGAGGSV TDSHLGVLAA LNAYRPIPGS NVSDSPARGS  360
HQHHGGGDRH D*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969954.10.0PREDICTED: transcription factor TCP15
TrEMBLA0A061EAE70.0A0A061EAE7_THECC; TCP family transcription factor, putative
STRINGEOY019750.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39152757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.12e-47TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]