PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011718t1
Common NameTCM_011718
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 397aa    MW: 43811.6 Da    PI: 7.9283
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011718t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.45.5e-40141251128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLp                +kky+++ r+nr+t +g+Wkatg+d++++
  Thecc1EG011718t1  14 MLPGFRFHPTDEELVGFYLKRKIQQRRLSI-ELIKQLDIYKYDPWDLP----------------SKKYRNSARPNRVTGAGFWKATGTDRPIY 89 
                       579***************************.89**************9................46899999********************* PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Thecc1EG011718t1  90 SSdGTKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 125
                       *956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-478156IPR003441NAC domain
PROSITE profilePS5100546.15314156IPR003441NAC domain
PfamPF023651.7E-2116125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDERSDTEKM EEVMLPGFRF HPTDEELVGF YLKRKIQQRR LSIELIKQLD IYKYDPWDLP  60
SKKYRNSARP NRVTGAGFWK ATGTDRPIYS SDGTKCIGLK KSLVFYKGRA AKGVKTDWMM  120
HEFRLPTLTD SAPPKRFLDK SLPANDSWAI CRIFKKTNST AQRALSQSWV SPIPEASSMS  180
DMPSRGSNSS QLSSENILLT TKTSSLAVQF NHDADIIQTP AAAFSPLDHF LSYKPITQMA  240
GKPPQLPAIA STGDLTSLIF APLETSSFPA KSAVDVTSML LNMSSSMLGD YGKAASDSTV  300
HFGGGSQDHC NGGFPGTLPH EMQGNINNNG DHESSLLKNL NVMTHVDDQW EPVRSIGFPF  360
SLPMSMGDAW KPSMPWDSSC PSEMSTSFST TTKCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-4111591171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971925.10.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9ZVH03e-92FEZ_ARATH; Protein FEZ
TrEMBLA0A061EAA50.0A0A061EAA5_THECC; NAC domain protein, IPR003441, putative
STRINGEOY019400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.12e-91NAC family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]