PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011693t2
Common NameTCM_011693
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 293aa    MW: 32266.3 Da    PI: 6.7151
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011693t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.42.1e-101233355
           G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                      +++m++ gLtl+h+kSHLQkYRl
  Thecc1EG011693t2  1 MRVMGIAGLTLYHLKSHLQKYRL 23
                      789*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-9125IPR009057Homeodomain-like
PfamPF143794.5E-2366112IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRVMGIAGLT LYHLKSHLQK YRLGKSQQTE ICLSNKQDDY REIQSSNGDF HSDISDETHK  60
QMNDLQIAQA LQMQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVLKKAQ ETLAGYSSSS  120
VGVELAKAEL SQLVSMVNTG CTSSSFSELT EGGGSSLKIE RKPMRGTICS MESSLTSSES  180
SGRKDEEPPK NENISTPKSN ASVELSLMDI HPEKKPLIGG SSNQAKGKKR SGSNISDGTC  240
VEQPLAKRLE LPEEETGHWL RKSGLLGSFD LNSQCQSDIE LGPKAIDLNC RE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5789865e-63JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971916.10.0PREDICTED: myb family transcription factor PHL8
SwissprotF4I2742e-59PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A061EAD00.0A0A061EAD0_THECC; Homeodomain-like superfamily protein isoform 2
STRINGEOY019000.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.24e-60G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]