PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG011693t2 | ||||||||
Common Name | TCM_011693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 293aa MW: 32266.3 Da PI: 6.7151 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 32.4 | 2.1e-10 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m++ gLtl+h+kSHLQkYRl Thecc1EG011693t2 1 MRVMGIAGLTLYHLKSHLQKYRL 23 789*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-9 | 1 | 25 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 4.5E-23 | 66 | 112 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MRVMGIAGLT LYHLKSHLQK YRLGKSQQTE ICLSNKQDDY REIQSSNGDF HSDISDETHK 60 QMNDLQIAQA LQMQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVLKKAQ ETLAGYSSSS 120 VGVELAKAEL SQLVSMVNTG CTSSSFSELT EGGGSSLKIE RKPMRGTICS MESSLTSSES 180 SGRKDEEPPK NENISTPKSN ASVELSLMDI HPEKKPLIGG SSNQAKGKKR SGSNISDGTC 240 VEQPLAKRLE LPEEETGHWL RKSGLLGSFD LNSQCQSDIE LGPKAIDLNC RE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX578986 | 5e-63 | JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017971916.1 | 0.0 | PREDICTED: myb family transcription factor PHL8 | ||||
Swissprot | F4I274 | 2e-59 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A061EAD0 | 0.0 | A0A061EAD0_THECC; Homeodomain-like superfamily protein isoform 2 | ||||
STRING | EOY01900 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.2 | 4e-60 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG011693t2 |
Entrez Gene | 18610385 |
Publications ? help Back to Top | |||
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