PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG011693t1

Common Name

TCM_011693

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 350aa MW: 38622.6 Da PI: 7.2919

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011693t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.9	1.3e-29	20	71	1	52
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 kprl+WtpeLH+rFveav+qLGG++kAtPk+++++m++ gLtl+h+kSHLQ Thecc1EG011693t1 20 KPRLKWTPELHQRFVEAVNQLGGADKATPKSLMRVMGIAGLTLYHLKSHLQA 71 79*************************************************4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-27	18	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-14	19	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-20	20	74	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	22	70	IPR001005	SANT/Myb domain
Pfam	PF14379	5.9E-23	123	169	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MGLQNLQNQN MSLVLSTDAK PRLKWTPELH QRFVEAVNQL GGADKATPKS LMRVMGIAGL 60 TLYHLKSHLQ AITLHYKYRL GKSQQTEICL SNKQDDYREI QSSNGDFHSD ISDETHKQMN 120 DLQIAQALQM QMEVQRKLHE QIEVQRHLQL RIEAQGKYLQ SVLKKAQETL AGYSSSSVGV 180 ELAKAELSQL VSMVNTGCTS SSFSELTEGG GSSLKIERKP MRGTICSMES SLTSSESSGR 240 KDEEPPKNEN ISTPKSNASV ELSLMDIHPE KKPLIGGSSN QAKGKKRSGS NISDGTCVEQ 300 PLAKRLELPE EETGHWLRKS GLLGSFDLNS QCQSDIELGP KAIDLNCRE*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MGLQNLQNQN MSLVLSTDAK PRLKWTPELH QRFVEAVNQL GGADKATPKS LMRVMGIAGL  60
TLYHLKSHLQ AITLHYKYRL GKSQQTEICL SNKQDDYREI QSSNGDFHSD ISDETHKQMN  120
DLQIAQALQM QMEVQRKLHE QIEVQRHLQL RIEAQGKYLQ SVLKKAQETL AGYSSSSVGV  180
ELAKAELSQL VSMVNTGCTS SSFSELTEGG GSSLKIERKP MRGTICSMES SLTSSESSGR  240
KDEEPPKNEN ISTPKSNASV ELSLMDIHPE KKPLIGGSSN QAKGKKRSGS NISDGTCVEQ  300
PLAKRLELPE EETGHWLRKS GLLGSFDLNS QCQSDIELGP KAIDLNCRE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-18	19	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-18	19	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-18	20	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	20	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	20	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	20	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-18	19	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-18	19	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-18	19	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-18	19	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-18	19	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-18	19	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578986	6e-63	JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017971916.1	0.0	PREDICTED: myb family transcription factor PHL8
Swissprot	F4I274	8e-84	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A061EA62	0.0	A0A061EA62_THECC; Homeodomain-like superfamily protein isoform 1
STRING	EOY01900	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.2	4e-84	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG011693t1
Entrez Gene	18610385

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]