PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG011692t1

Common Name

TCM_011692

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 500aa MW: 54455.6 Da PI: 8.9127

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011692t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.1e-39	141	201	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk k+ss Thecc1EG011692t1 141 PDKILPCPRCNSKETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKTKSSS 201 7899*****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	132	198	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-31	143	199	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.723	145	199	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	147	183	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MSKLNDSSAI KLFGKTIPLS TLNQDEALAD QEIPFRGATR EDRGDGNLVS SSSPLGGVNS 60 NDGVQAQVIR EDQESTEKEL PKDKQKDSTS DQIRDDLKDP TALSGNDRSP LAERNTSSLK 120 SSKNEGTSET TSSQEKTLKK PDKILPCPRC NSKETKFCYY NNYNVNQPRH FCKNCQRYWT 180 AGGTMRNVPV GAGRRKTKSS SALHYHQIMI SEAIRAAKAS AANGMYRNPS CENNNGHVLT 240 FGSDSSVPVA SVFNLSGKTQ INVQNGFRKT EQRYLVEDNH SGESLITASY SLEKEGNASL 300 NQAEVKNRHW FTSTAPCFSR PSWPYSWDSI PAMLPPPPAL CPPSFPVSVH RAPLTYSGCS 360 VPSPWDVPVA SPSPSSVNQC APSSSPTSPT LGKHSRDENF LSPANLEKEK PSGEGDKSEG 420 RALISKTLKI DDPGETAKSS MLATIVIKGK KTNSINPGGL FDGFQSKSRD EKNYRLETFS 480 VLRANPAALS RSLKFHENT*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MSKLNDSSAI KLFGKTIPLS TLNQDEALAD QEIPFRGATR EDRGDGNLVS SSSPLGGVNS  60
NDGVQAQVIR EDQESTEKEL PKDKQKDSTS DQIRDDLKDP TALSGNDRSP LAERNTSSLK  120
SSKNEGTSET TSSQEKTLKK PDKILPCPRC NSKETKFCYY NNYNVNQPRH FCKNCQRYWT  180
AGGTMRNVPV GAGRRKTKSS SALHYHQIMI SEAIRAAKAS AANGMYRNPS CENNNGHVLT  240
FGSDSSVPVA SVFNLSGKTQ INVQNGFRKT EQRYLVEDNH SGESLITASY SLEKEGNASL  300
NQAEVKNRHW FTSTAPCFSR PSWPYSWDSI PAMLPPPPAL CPPSFPVSVH RAPLTYSGCS  360
VPSPWDVPVA SPSPSSVNQC APSSSPTSPT LGKHSRDENF LSPANLEKEK PSGEGDKSEG  420
RALISKTLKI DDPGETAKSS MLATIVIKGK KTNSINPGGL FDGFQSKSRD EKNYRLETFS  480
VLRANPAALS RSLKFHENT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970507.1	0.0	PREDICTED: cyclic dof factor 3
TrEMBL	A0A061EHW9	0.0	A0A061EHW9_THECC; F-box family protein, putative
STRING	EOY01899	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-74	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Thecc1EG011692t1
Entrez Gene	18610384

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]