PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011689t1
Common NameTCM_011689
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 469aa    MW: 51689.1 Da    PI: 6.7803
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011689t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-16150195147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Thecc1EG011689t1 150 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 195
                       899*****************************.***********996 PP
2Myb_DNA-binding57.14e-18202245146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Thecc1EG011689t1 202 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 245
                       678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.201145196IPR017930Myb domain
SMARTSM007173.3E-14149198IPR001005SANT/Myb domain
PfamPF002498.3E-16150195IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-28150243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25151203IPR009057Homeodomain-like
CDDcd001674.81E-13153194No hitNo description
PROSITE profilePS5129427.592197251IPR017930Myb domain
SMARTSM007178.2E-15201249IPR001005SANT/Myb domain
PfamPF002496.5E-15202244IPR001005SANT/Myb domain
CDDcd001675.83E-12204244No hitNo description
Gene3DG3DSA:1.10.10.604.9E-21204250IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MVNKCVIYAP DDMNRLSCHS STPSSSSSSP GSSMGMVYPD MGSLSLGPNY GIVGSSVSSS  60
QDSYACKGSE MENERASSWG FHFMGNCKAR SFEENHSSDV VEGKDSDCSD GFGDNNRSIN  120
LNANLNEENS NENGVSGKET DSGQSKLCAR GHWRPAEDTK LKELVALYGP QNWNLIAEKL  180
EGRSGKSCRL RWFNQLDPRI NRRAFTEEEE ERLMQAHRLY GNKWAMIARL FPGRTDNAVK  240
NHWHVIMARK YREQSSAYRR RKLSQSVYRR MEETPTFVCR DAATKAEPPP YCLNIPNRRL  300
GIISQYQFGT FNGADGGVDV GVSNVSPHMT SGREAISSSE VPHSGLCAQQ APFDFFPGVN  360
SNDMVGMFSQ TRSWGARPID EPQICGFYPH HQQQQQQPSS YMMAMQQSDF LSSQSLTDCT  420
ASTPQVSASE PSSSVAGSRA AASSHSHSHS HYEIVQPPFI DFLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-341502507107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527270.0KM052727.1 Gossypium hirsutum LOF-like transcription factor LOF3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970215.10.0PREDICTED: uncharacterized protein LOC18610382
TrEMBLA0A061EBW90.0A0A061EBW9_THECC; Myb domain protein 105
STRINGEOY018970.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-76myb domain protein 105
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]