PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011664t1
Common NameTCM_011664
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 369aa    MW: 41053.3 Da    PI: 7.6592
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011664t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l  +++++G g+W+t +++ g++R++k+c++rw +yl
  Thecc1EG011664t1 14 RGPWTAEEDQKLTAYIQLHGHGSWSTLPEKAGLKRCRKSCRLRWINYL 61
                      89********************************************97 PP
2Myb_DNA-binding50.54.7e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ +E++ +v++++ lG++ W+ Ia+ ++ +Rt++++k++w+++l
  Thecc1EG011664t1  67 RGKFSLQEEQTIVQLHAFLGNR-WSVIAAQLP-KRTDNEIKNHWNTHL 112
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.014961IPR017930Myb domain
SuperFamilySSF466896.6E-2911108IPR009057Homeodomain-like
SMARTSM007173.7E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001671.07E-101661No hitNo description
PROSITE profilePS5129424.24662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2565117IPR009057Homeodomain-like
SMARTSM007174.4E-1566114IPR001005SANT/Myb domain
PfamPF002491.1E-1467112IPR001005SANT/Myb domain
CDDcd001672.20E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGSSKCCEKE GLKRGPWTAE EDQKLTAYIQ LHGHGSWSTL PEKAGLKRCR KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIVQ LHAFLGNRWS VIAAQLPKRT DNEIKNHWNT HLKKRLIKMG  120
IDPKTHKPRI DALGFPTRHG GIDANLSHMA QWERARLEAE ARSAGVSNNK PAVPNHVQPK  180
KSQFGCLTPR PKCLDLLRAW QGLVTGMFNF SDRDDLESPG SISNFSHRGF QVPTAGINQN  240
AAGEGTLLPC IATNSYTCDE LDDVGNWKRC EKFNQMQEFD EALQGRTCST EDAGFVDRIY  300
VEGNDYEVIA NFMGDSPGTL VGVPASYSSM ELEISNGSCS IGCMADDGSY WDPTLKFMNA  360
SSSDSSVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046025.20.0PREDICTED: transcription factor MYB76
TrEMBLA0A061EBT20.0A0A061EBT2_THECC; Myb domain 16-like protein
STRINGEOY018570.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-79myb domain protein 16
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]