PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011660t1
Common NameTCM_011660
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 386aa    MW: 42502.9 Da    PI: 7.0951
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011660t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l  +++++G g+W++ +++ g+ R++k+c++rw +yl
  Thecc1EG011660t1 14 RGPWTAEEDKILTAYIQEHGHGSWRALPEKAGLQRCGKSCRLRWINYL 61
                      89********************************************97 PP
2Myb_DNA-binding51.91.7e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg ++ +E++++++++++lG++ W++ a++++ +Rt++++k++w+++l
  Thecc1EG011660t1  67 RGEFSSQEEQIIIQLHALLGNR-WSAMAAHLP-KRTDNEIKNHWNTHL 112
                       899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.091961IPR017930Myb domain
SuperFamilySSF466891.54E-2911108IPR009057Homeodomain-like
SMARTSM007173.9E-131363IPR001005SANT/Myb domain
PfamPF002492.1E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-241568IPR009057Homeodomain-like
CDDcd001676.75E-111661No hitNo description
PROSITE profilePS5129424.77362116IPR017930Myb domain
SMARTSM007171.9E-1666114IPR001005SANT/Myb domain
PfamPF002493.8E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2669117IPR009057Homeodomain-like
CDDcd001671.00E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRSPSFKKE GLKRGPWTAE EDKILTAYIQ EHGHGSWRAL PEKAGLQRCG KSCRLRWINY  60
LRPDIKRGEF SSQEEQIIIQ LHALLGNRWS AMAAHLPKRT DNEIKNHWNT HLKKRLIKMG  120
IDPMTHKPRA DASIFPSGPG KSASNLTHMA QWESARLEAE ARLVRESKQV VPNPIQRKTQ  180
FPPTSGQLIN NIAAATSGRP RCLDVLKAWQ GVVAGMFAFS SQDLGSPTST LSFPNGTVRA  240
PVNGLAGYTD GEMGPHKSSS TGLRGTASTE LDGQDSLKCV DHMSNQMEEL EEKILDSFVE  300
LQHVTDSAGD AWFEDSFRIV NENVPLADIM EDLSGALIFN SGVLNSSIGD QKSIESCNDN  360
MVENSNCWNS VLNFVNSSPY GSPVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970561.10.0PREDICTED: transcription factor MYB76
SwissprotQ9LE636e-93MY106_ARATH; Transcription factor MYB106
TrEMBLA0A061EA210.0A0A061EA21_THECC; Myb domain protein 16, putative
STRINGEOY018550.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2244245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-95myb domain protein 16
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]